Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04516 ATGACCAAGAAGATGCATATGTGGGGGCATGGATCACAATACAAAAAAGGTCTTGAATCTCTAAAAGGTACACAGCCAACAGGAATGTTAAGGCTACCTTGTTACTGTTGTGTACCAGGGTGCATAAACAACATTGATCATCCAAGAGCAAATCCATTGAAAGATTTTAGAACACTTCAAACACATTACAAGAGGAAACATGGAATTAAGCCTTTTATGTGCACAAAATGTAGCAAATCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGGAAGCTGTGGTGTTGTATTTGTGGTTCAAATTTCAAACATAAGAGGTCTCTTAAAGATCATATCAATGCTTACGGAAATGGTCATGCTATTTATGGATAA 384 0.3672 MTKKMHMWGHGSQYKKGLESLKGTQPTGMLRLPCYCCVPGCINNIDHPRANPLKDFRTLQTHYKRKHGIKPFMCTKCSKSFAVRGDWRTHEKNCGKLWCCICGSNFKHKRSLKDHINAYGNGHAIYG 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04516 127 SUPERFAMILY beta-beta-alpha zinc fingers 58 92 IPR036236 -
Vivi6g04516 127 Gene3D Classic Zinc Finger 51 124 - -
Vivi6g04516 127 PANTHER ZINC FINGER PROTEIN WIP2 3 125 IPR043584 GO:0003700|GO:0010468
Vivi6g04516 127 FunFam Zinc finger protein WIP2 41 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04516 Vivi-Chr6 146860547 146861469 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04516 4 127 C2H2 Transcription Factor Family AT3G57670 87.097 5.69e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g04516 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04516 - - vvo:131614938 291.197