Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04514 ATGGCTGATCACCCTTACCGCTCTAATAATTTCTATTCATCATCATCACCAAGTTTCTTCCAATTCAACAATATTTCTCCATCTTCAAACCCTTCTCCATACAACCACCATCACCCTTTTCTTCATCACCGCAGCAACAACCAGTACCATCATATTTCTACTTCTTTACCACATGTTGCTCCGCTTCGGCAAGAGCTACCTCTTTTAAGCCTAATCCCAGAAAAACAAGAACATGAAGAAGATCTCCAATACCTTCCTTGTACTGCCATGGATTTAGAAGAAAGGAATGAAGATGGTAGTACAACTCCTACTACCGTTGCACTTCACATGGGTTTGCCAAACCCCAGTCCTGCTGAAATGGCTTTTCTACTTTCTTCATCAAATAATTCCTCAGAAATCACTGTCACTGATAAAGAACAAGGTGATGATTCTTCTTCAAGGTTCATGATGCTTCATAATAACAGTCTTAACAAAGGACAGTATTGGATCCCTACTCCATCTCAGATTCTCAATGGTCCAACACAGTTTGCTTGCCCGGTTTGCTCCAAAACATTCAACAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAAAAAAGGTCTTGAATCTCTAAAAGGTACACAGCCAACAGGAATGTTAAGGCTACCTTGTTACTGTTGTGTACCAGGGTGCATAAACAACATTGATCATCCAAGAGCAAATCCATTGAAAGATTTTAGAACACTTCAAACACATTACAAGAGAAAACATGGAATTAAGCCTTTTATGTGCACAAAATGTAGCAAATCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGGAAGCTGTGGTGCTGTATTTGTGGTTCAAATTTCAAACATAAGAGGTCTCTTAAAGATCATATCAATGCTTATGGAAATGGTCATGCTATTTATGGATAA 948 0.3882 MADHPYRSNNFYSSSSPSFFQFNNISPSSNPSPYNHHHPFLHHRSNNQYHHISTSLPHVAPLRQELPLLSLIPEKQEHEEDLQYLPCTAMDLEERNEDGSTTPTTVALHMGLPNPSPAEMAFLLSSSNNSSEITVTDKEQGDDSSSRFMMLHNNSLNKGQYWIPTPSQILNGPTQFACPVCSKTFNRYNNMQMHMWGHGSQYKKGLESLKGTQPTGMLRLPCYCCVPGCINNIDHPRANPLKDFRTLQTHYKRKHGIKPFMCTKCSKSFAVRGDWRTHEKNCGKLWCCICGSNFKHKRSLKDHINAYGNGHAIYG 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04514 315 SMART c2h2final6 260 280 IPR013087 -
Vivi6g04514 315 SMART c2h2final6 285 311 IPR013087 -
Vivi6g04514 315 SMART c2h2final6 176 198 IPR013087 -
Vivi6g04514 315 FunFam Zinc finger protein WIP2 229 311 - -
Vivi6g04514 315 Gene3D Classic Zinc Finger 175 198 - -
Vivi6g04514 315 FunFam zinc finger protein WIP2-like 175 198 - -
Vivi6g04514 315 SUPERFAMILY beta-beta-alpha zinc fingers 245 280 IPR036236 -
Vivi6g04514 315 Pfam C2H2-type zinc finger 176 195 - -
Vivi6g04514 315 PANTHER ZINC FINGER PROTEIN WIP2 32 313 IPR043584 GO:0003700|GO:0010468
Vivi6g04514 315 SUPERFAMILY beta-beta-alpha zinc fingers 172 198 IPR036236 -
Vivi6g04514 315 ProSitePatterns Zinc finger C2H2 type domain signature. 178 198 IPR013087 -
Vivi6g04514 315 Gene3D Classic Zinc Finger 239 312 - -
Vivi6g04514 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 203 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04514 Vivi-Chr6 146820368 146822991 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04514 62 315 C2H2 Transcription Factor Family AT3G57670 60.825 8.34e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g04514 zf-C2H2_6 0.00017 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04514 - - vvo:131612664 525.398