Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04513 ATGGCTGATCACCCTTACCGCTCTAATAATTTCTATTCATCATCACCAAGTTTCTTCCAATTCAACCATACTTCTCCATCTTCAAACCCTTCTCCATACAACCACCATCACCCTTTTCTTCATCACCACAGCAACTACCACACCTTTTTCCAATACCATCATATTTCTTCTTCTTTACCACATGTTGCTCCGCTTCGGCAAGAGCTACCTCTTTTAAGCCTAATCCCAGAAAAACAAGAACATGAAGAAGATCTCCAATACCTTCCTTGTACTGCCATGGATTTAGAAGAAAGGAATGAAGATGGTAGTACAACTCCTACTACCGTTGCACTTCACATGGGTTTGCCAAACCCCAGTCCTGCTGAAATGGCTTTTCTACTTTCTTCATCAAATAATTCCTCAGAAATCACTGTCACTGATAAAGAACAAGGTGATGATTCTTCTTCAAGGTTCATGATGCTTCATAATAACAGTCTTAACAAAGGACAGTATTGGATCCCTACTCCATCTCAGATTCTCAATGGTCCAACACAGTTTGCTTGCCCGGTTTGCTCCAAAACATTCAACAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAAAAAAGGTCTTGAATCTCTAAAAGGTACACAACCAACAGGAATGTTAAGGCTACCTTGTTACTGTTGTGTGCTAGGGTGCATAAACAACATCGATCATCCAAGAGCAAATCCATTGAAAGATTTTAGAACACTTCAAACACATTACAAGAGAAAACATGGAATAAAGCCTTTTATGTGCACAAAATGTAGCAAATCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGGAAGCTATGGTGTTGTATTTGTGGTTCAAATTTCAAACATAAGAGGTCTCTTAAAGATCATATCAATGCTTATGGAAATGGTCATGCTATTTATGGATAA 957 0.3866 MADHPYRSNNFYSSSPSFFQFNHTSPSSNPSPYNHHHPFLHHHSNYHTFFQYHHISSSLPHVAPLRQELPLLSLIPEKQEHEEDLQYLPCTAMDLEERNEDGSTTPTTVALHMGLPNPSPAEMAFLLSSSNNSSEITVTDKEQGDDSSSRFMMLHNNSLNKGQYWIPTPSQILNGPTQFACPVCSKTFNRYNNMQMHMWGHGSQYKKGLESLKGTQPTGMLRLPCYCCVLGCINNIDHPRANPLKDFRTLQTHYKRKHGIKPFMCTKCSKSFAVRGDWRTHEKNCGKLWCCICGSNFKHKRSLKDHINAYGNGHAIYG 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04513 318 SUPERFAMILY beta-beta-alpha zinc fingers 175 201 IPR036236 -
Vivi6g04513 318 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
Vivi6g04513 318 Gene3D Classic Zinc Finger 242 315 - -
Vivi6g04513 318 PANTHER ZINC FINGER PROTEIN WIP2 32 316 IPR043584 GO:0003700|GO:0010468
Vivi6g04513 318 FunFam zinc finger protein WIP2-like 178 201 - -
Vivi6g04513 318 Gene3D Classic Zinc Finger 178 201 - -
Vivi6g04513 318 SUPERFAMILY beta-beta-alpha zinc fingers 248 283 IPR036236 -
Vivi6g04513 318 SMART c2h2final6 288 314 IPR013087 -
Vivi6g04513 318 SMART c2h2final6 263 283 IPR013087 -
Vivi6g04513 318 SMART c2h2final6 179 201 IPR013087 -
Vivi6g04513 318 Pfam C2H2-type zinc finger 179 198 - -
Vivi6g04513 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
Vivi6g04513 318 FunFam Zinc finger protein WIP2 232 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04513 Vivi-Chr6 146793356 146796242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04513 65 318 C2H2 Transcription Factor Family AT3G57670 60.481 2.39e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g04513 zf-C2H2_6 0.00017 CL0361