Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04512 ATGGCTGATCACCCTTACCGCTCTAATAATTTCTATTCATCATCATCAAGTTTCTTCCAATTCAACAATATTTCTCCATCTTCAAACCCTTCTCCATACAACCACCATCACCCTTTTCTTCATCACCGCAGCAACAACCAGTACCATCATATTTCTACTTCTTTACCACATGTTGCTCCGCTTCGGCAAGAGCTACCTCTTTTAAGCCTAATCCCAGAAAAACAAGAACATGAAGAAGATCTCCAATACCTTCCTTGTACTGCCATGGATTTAGAAGAAAGGAATGAAGATGGTAGTACAACTCCTACTACCGTTGCACTTCACATGGGTTTGCCAAACCCCAGTCCTGCTGAAATGGCTTTTCTACTTTCTTCATCAAATAATTCCTCAGAAATCACTGTCACTGATAAAGAACAAGGTGATGATTCTTCTTCAAGGTTCATGATGCTTCATAATAACAGTCTTAACAAAGGACAGTATTGGATCCCTACTCCATCTCAGATTCTCAATGGTCCAACACAGTTTTCTTGCACTGTTTGCTCCAAAACTTTCAACAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAAAAAAGGTCTTGAATCTCTAAAAGGTACACAGCCAACAGGAATGTTAAGGCTACCTTGTTACTGTTGTGTACCAGGGTGCATAAACAACATTGATCATCCAAAAGCAAATCCATTGAAAGATTTTAGAACACTTCAAACACATTACAAGAGAAAACATGGAATTAAGCCTTTTATGTGCACAAAATGTAGCAAATCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGGAAGCTGTGGTGCTGTATTTGTGGTTCAAATTTCAAACATAAGAGGTCTCTTAAAGATCATATCAATGCTTATGGAAATGGTCATGCTATTTATGGATAA 945 0.3831 MADHPYRSNNFYSSSSSFFQFNNISPSSNPSPYNHHHPFLHHRSNNQYHHISTSLPHVAPLRQELPLLSLIPEKQEHEEDLQYLPCTAMDLEERNEDGSTTPTTVALHMGLPNPSPAEMAFLLSSSNNSSEITVTDKEQGDDSSSRFMMLHNNSLNKGQYWIPTPSQILNGPTQFSCTVCSKTFNRYNNMQMHMWGHGSQYKKGLESLKGTQPTGMLRLPCYCCVPGCINNIDHPKANPLKDFRTLQTHYKRKHGIKPFMCTKCSKSFAVRGDWRTHEKNCGKLWCCICGSNFKHKRSLKDHINAYGNGHAIYG 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04512 314 SMART c2h2final6 175 197 IPR013087 -
Vivi6g04512 314 SMART c2h2final6 259 279 IPR013087 -
Vivi6g04512 314 SMART c2h2final6 284 310 IPR013087 -
Vivi6g04512 314 SUPERFAMILY beta-beta-alpha zinc fingers 244 279 IPR036236 -
Vivi6g04512 314 Gene3D Classic Zinc Finger 238 311 - -
Vivi6g04512 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 202 IPR013087 -
Vivi6g04512 314 SUPERFAMILY beta-beta-alpha zinc fingers 168 197 IPR036236 -
Vivi6g04512 314 FunFam Zinc finger protein WIP2 228 310 - -
Vivi6g04512 314 Pfam C2H2-type zinc finger 175 194 - -
Vivi6g04512 314 ProSitePatterns Zinc finger C2H2 type domain signature. 177 197 IPR013087 -
Vivi6g04512 314 Gene3D Classic Zinc Finger 174 197 - -
Vivi6g04512 314 PANTHER ZINC FINGER PROTEIN WIP2 31 312 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04512 Vivi-Chr6 146747706 146749225 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04512 61 314 C2H2 Transcription Factor Family AT3G57670 60.481 9.83e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g04512 zf-C2H2_6 0.00023 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04512 - - vvo:131612664 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04512 6 146747706 146749225 Vivi6g04512 6 146747706 146749225 ECH
Vivi6g04512 6 146747706 146749225 Vivi2g07470 2 219196456 219199283 ECH