Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04510 CACACCTTTTTCCAATATCATCATATTTCTTCTTCTTTACCACATGTTCCTCCTCTTAGAGAAGAGCTACCTCTTTTAAGCCTAATCCCAGAAAAACAAGAAGAATATGAAGATATCCATTACCTTCCTTGCACTTCCATGGGTTTAGAAGAAAGAAATGAAGATGGTAGTACAACTTCTACTACCGTTGCACTTCACATGGGTTTGCCAAACCCTAGTGCTGCTGAAATGGCTTCTGTCCTTCCTTCACCAAATAACACCTTAGAGATCACTGACAATGATAAAGAACACTGTGATGATTCGTCTTCAGGTTTCATGATGCTTCATAATAATAACAGCCTTAACAAAGGACAGTACTGGATCCCTACTCCTTCTCAGATTCTCAATGGTCCAACTCAGTTTTCTTGCCCGGTTTGCTCCAAAACATTCAACAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAAAAAAGGTCTTGAATCTCTAAAAGGTACACAGCCAACAGGAATGTTAAGGCTACCTTGTTACTGTTGTGTACCAGGGTGCATAAACAACATTGATCATCCAAAAGCAAATCCATTGAAAGATTTTAGAACACTTCAAACACATTACAAGAGAAAACATGGAATTAAGCCTTTTATGTGCACAAAATGTAGCAAATCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGGAAGCTGTGGTGTTGTGTTTGTGGTTCAAATTTCAAACATAAGAGGTCTCTTAAAGATCATATAAATGCTTATGGAAATGGTCATGCTTTTTATGGGTAA 822 0.3796 HTFFQYHHISSSLPHVPPLREELPLLSLIPEKQEEYEDIHYLPCTSMGLEERNEDGSTTSTTVALHMGLPNPSAAEMASVLPSPNNTLEITDNDKEHCDDSSSGFMMLHNNNSLNKGQYWIPTPSQILNGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYKKGLESLKGTQPTGMLRLPCYCCVPGCINNIDHPKANPLKDFRTLQTHYKRKHGIKPFMCTKCSKSFAVRGDWRTHEKNCGKLWCCVCGSNFKHKRSLKDHINAYGNGHAFYG 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04510 273 ProSitePatterns Zinc finger C2H2 type domain signature. 136 156 IPR013087 -
Vivi6g04510 273 FunFam Zinc finger protein WIP2 187 269 - -
Vivi6g04510 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 161 IPR013087 -
Vivi6g04510 273 Pfam Zinc finger, C2H2 type 134 153 IPR013087 -
Vivi6g04510 273 PANTHER ZINC FINGER PROTEIN WIP2 12 271 IPR043584 GO:0003700|GO:0010468
Vivi6g04510 273 SMART c2h2final6 218 238 IPR013087 -
Vivi6g04510 273 SMART c2h2final6 243 269 IPR013087 -
Vivi6g04510 273 SMART c2h2final6 134 156 IPR013087 -
Vivi6g04510 273 FunFam zinc finger protein WIP2-like 133 156 - -
Vivi6g04510 273 Gene3D Classic Zinc Finger 199 270 - -
Vivi6g04510 273 SUPERFAMILY beta-beta-alpha zinc fingers 202 238 IPR036236 -
Vivi6g04510 273 Gene3D Classic Zinc Finger 133 156 - -
Vivi6g04510 273 SUPERFAMILY beta-beta-alpha zinc fingers 119 156 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04510 Vivi-Chr6 146740989 146742231 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04510 19 273 C2H2 Transcription Factor Family AT3G57670 61.168 3.48e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g04510 zf-C2H2_6 0.00026 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04510 - - vvo:131612664 579.711