Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04496 ATGGAGAGAGGGGCGACTAAGAAGAAAGCACCACCTCTCTCTTTGGAACAATTCATCTCCATCACTGCCCCTCTTCTCGACTTGGAAAAGGAGGCTGAGATATCGAGTTCAATCGCCACTGGTGCATCCAGGAATTTGGATACTGCTCAAAAGAGAGGATCAACAATTCTCAATTTGAAGTGTGTGGATGTTCAGACAGGGCTTATGGGAAAGTCTCTGATCGAGCTCCAATCCACAAAAGCAGATGTTCTTCCTGCACACAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGGCAAGGTGTAGTTTACAGATTGAAGGACTCATCAATTACTGTAGCTTTTGATGATATACCAGAAGATGGTTTAAACAGTCCCCTAAGGCTGGAAAAAGTTGCAAATGAGGTGACATATCACAGGATGAAAGATGCATTAATACAGTTGAGTAAAGGTGTGCATAAGGGCCCTGCTTCTGATCTAATCCCTGTCTTGTTTGGGGAGAGGCAACCAACAGTGTCCAAGAAGGATGTATCCTTCACTTCCGTTAATAGAAATCTTGATCACTCCCAGAAAGATGCAATTTCAAAAGCCCTATCGTCGAAGAATGTTTTTTTGCTACATGGACCTCCTGGAACTGGAAAAACTACAACAGTGGTTGAAATTATATTACAAGAAGTGAAACGTGGATCTAAGATTCTCGTTTGTGCTGCCTCAAATATTGCTGTTGACAACATCGTTGAGCGGCTAGTTCCACACAGAGTTAAGCTGGTGAGGATTGGTCACCCTGCACGTTTATTGCCCCAAGTACTGGACAGTGCACTGGATGCTCAGGTACTACGAGGAGATAATAGTGGCCTTGCAAATGACATTCGGAAAGAAATGAAGGTATTGAATGGAAAGCTGCTAAAAACCAAAGAAAAAAATACGAGGAGGGAAATACAGAAGGAACTTAGGACTCTATCTAGAGAAGAGCGGAAAAGGCAACAGCTTGCTGTTACAGACGTGATTAAAACTGCAGATGTAATATTAACTACTCTGATTGGGGCTTTCACTAAGAAACTTGAGCGCACTTCATTTGATTTGGTGATTATTGACGAAGCTGCTCAAGCACTTGAGATAGCTTGTTGGATACCTCTGCTAAAGGGTACAAGATGTATACTTGCAGGAGATCATCTTCAGCTTCCTCCCACCATTCAAAGTGTTGAAGCTGAGAAGAAGGGCTTAGGAAGAACCCTCTTCGAACGACTTGCAGATCTGTATGGAGAGGAAGTCACATCTATGCTTACCGTCCAATATCGTATGCATCAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGGTTAAGGCTCATCCGAGCGTTGCTGCACATACACTATATGATCTTGAGAATGTGAAGAGGACATCTTCAACTGAACCAACCATTCTTCTCATAGACACAACTGGATGTGATATGGAAGAAAAGAAAGATGAGGAAGACAGCACTCTTAACGAAGGAGAATCTGAAGTTGCTATGGCTCATGCAAAGCGATTAGTGCAAAGCGGGGTGCTTCCTTCTGATATTGGAATCATTACCCCATATGCTGCTCAGGTTGTTTTACTCAAAATGTTGAAAAACAAGGAAAACTCGCTGAAGGATATTGAGATCTCAACAGTTGATGGTTTCCAGGGAAGGGAGAAGGAGGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAGGAGGTGGGCTTTCTGAGTGATCGCAGGCGAATGAATGTGGCCGTTACACGAGCAAGAAGGCAATGCTGTATTATCTGTGACACTGAGACAGTCAGTAATGATGGATTTCTAAAGCGGTTGGTTGAATATTTTGAAGAGCACGGCGAATATCAGAGTGCATCTGAGTACCAGAATTAG 1941 0.4245 MERGATKKKAPPLSLEQFISITAPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIELQSTKADVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYHRMKDALIQLSKGVHKGPASDLIPVLFGERQPTVSKKDVSFTSVNRNLDHSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILVCAASNIAVDNIVERLVPHRVKLVRIGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKVLNGKLLKTKEKNTRREIQKELRTLSREERKRQQLAVTDVIKTADVILTTLIGAFTKKLERTSFDLVIIDEAAQALEIACWIPLLKGTRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLADLYGEEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHPSVAAHTLYDLENVKRTSSTEPTILLIDTTGCDMEEKKDEEDSTLNEGESEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKENSLKDIEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCIICDTETVSNDGFLKRLVEYFEEHGEYQSASEYQN 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04496 646 FunFam DNA-binding protein SMUBP-2 41 143 - -
Vivi6g04496 646 FunFam P-loop containing nucleoside triphosphate hydrolase 443 646 - -
Vivi6g04496 646 NCBIfam IGHMBP2 family helicase 345 642 IPR004483 GO:0003677|GO:0005524
Vivi6g04496 646 SMART AAA_5 211 433 IPR003593 GO:0016887
Vivi6g04496 646 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 15 645 - -
Vivi6g04496 646 CDD SF1_C_Upf1 445 633 IPR047187 -
Vivi6g04496 646 SMART ultradead3 193 444 IPR014001 -
Vivi6g04496 646 Pfam AAA domain 420 616 IPR041679 -
Vivi6g04496 646 CDD DEXXQc_SMUBP2 196 444 - -
Vivi6g04496 646 Coils Coil 298 337 - -
Vivi6g04496 646 Pfam AAA domain 197 411 IPR041677 GO:0004386
Vivi6g04496 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 632 IPR027417 -
Vivi6g04496 646 Gene3D - 443 646 IPR027417 -
Vivi6g04496 646 Gene3D - 24 427 IPR027417 -
Vivi6g04496 646 Gene3D - 41 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04496 Vivi-Chr6 146548207 146555527 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04496 170 380 Core DNA Replication Machinery Family AT1G08840 27.014 6.77e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04496 - K19036 gmx:100810545 1146.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04496 6 146548207 146555527 Vivi6g04496 6 146548207 146555527 ECH