Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04476 ATGTGCTGTGAGTTGGAGCGGTTAAAGCCAGCGCCATATCCTTCTCTATCTCCAGTTTTGACACGCGATTCTCAACCAGGAAACAACGCCATGAATCACTTAACTGTTGGCACTGAAGATTCTTTTGCGAGCTTACTTGAGCTTGCTGCTAATAACAATGTTGAGGGGTTCAAGCGGTTGATTGAGTTTGATCCTATGTCGGTTGATGAGATTGGATTGTGGTATGGTCGAAGGAAGGGATCGAAGCAGATGGTGAATGAGAGAAGGACACCTTTGATGGTTGCTGCTACCTATGGTAGTATTGATGTTATGAAACTGATTATTTCTCTATCTGATGTTGACATCAATAGGCCTTGTGGCCTTGACAAGAGCACTGCTCTTCACTGTGCTGCATCAGGTGGGGCTGAAAATGCTGTTGATGCTGTGAAGCTGCTTCTTGCCGCAGGGGCGGATCCCAATTCCGCGGATGCTAACGGGGATCGTCCGAAAGATGTTATTGTTTATCCCCCTAAGCTTGAATTTGTGAAAATCAGTCTTGAAGAGCTTCTTCAAACTGATGATCCCAGTGTTGGCTGTAATCTTAGGGTGATTACGAATTCCTTTAATACGTATTCTCCTCCTTTGTCAGCTTCACCTGAGAACGGGTCTCCTTCTCCACCGCCAGATCTTCTATTGAGGTTAAAGTCAATTGATGTCCCTATTTCTCCCGCTGCATCTGAGAAGAAAGAATATCCTGTTGATCCGTCCCTTCCTGATATCAAAAACAGCATATATTCAACCGATGAATTCCGTATGTATTCTTTCAAGGTGCGACCGTGTTCGCGTGCTTATTCCCATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCCCGGAGAAGGGACCCGAGAAAGTATCACTACAGCTGCGTTCCTTGTCCTGATTTTCGCAAGGGAGCTTGCCGGCGAGGGGATATGTGTGAATATGCTCATGGAGTCTTCGAGTGCTGGTTACATCCTGCACAGTATAGAACCCGTCTCTGCAAGGATGGGATAAATTGCTCTAGAAGGGTTTGCTTCTTTGCCCACACAGCTGAAGAGCTTCGACCATTGTATGTTTCAACGGGTTCTGCTGTTCCCTCACCTAGATCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCACCTTCTTCAATGTCTGTTATGTCTCCTTCCCCATTCACTCCACCCATGTCACCTTCCGGCAATGGCATTTCACACAACTCTGGTGCTTGGCCACAGCCAAATATCCCAGCGTTGCATCTTCCGGGAAGTAATCTCCAATCCAGCCGGTTGAGATCTTCACTCAATGCTCGAGATATTCATATGGATGAATTTGACATGTTATCTGATTATGATCAACAGCAACAGCTCATCAATGAGTTGGCATGCCTCTCTCCACACCATTTGAATTCTAACAGTCTTAGCCGCTCTGGTCGAATGAAGCCATTGAATCCATCAAATCTTGATGATCTCTTTTCCGCCGAGAGTTCTTCTCCTCGCTATGCCGATCCAACACTGAATTCAACTGTTTTTTCTCCGACTCACAAATCAGCTGTCTTTAACCAGTTTCAGCAGCAGCAAAACATGTTGTCACCAGTGAATACAAATTTTTCTCCCAAAAATGTTGACCATCATTTATTGCAGGCAGCTTCTTATGGTGTTCAGCCATCAGGAAGAATGTCTCCACGGAATGTGGAACCTATCTCGCCAATGAGCTCAAGGATGTCGATGCTGGCACAACGCGACAAGCAACAACAATTTCGCAGCCTAAGCTTCCGCGAGCACGGCTCTAACTCTATGCTTGCACCTCCCGGCTCAGTCAATTCTTGGTCCAAATGGGAATCTCCCAATGGTAAGCTAGATTGGGCTCACAATGCAGAAGAAGTAGGCAAGCTCCGTAGATCATCCTCTTTCGAGCTCGGGAACAATGGCGAGGAGCCTGATTTATCATGGGTGCAGTCACTCGTCAAAGAATCTCCAACCGAGATCAAAGAGAAATTGACAACATCTATCCCAAACACTGCGCCTGCGGGAACATCCGGTGAGGGATTGAATAGGAATATGAATGCACAAATGGACTCTGCCGATCATGCTGTACTGGGAACATGGCTCGAACAGATGCAGCTTGACCATCTCGTAGCTCAGCAAAACTGA 2202 0.4659 MCCELERLKPAPYPSLSPVLTRDSQPGNNAMNHLTVGTEDSFASLLELAANNNVEGFKRLIEFDPMSVDEIGLWYGRRKGSKQMVNERRTPLMVAATYGSIDVMKLIISLSDVDINRPCGLDKSTALHCAASGGAENAVDAVKLLLAAGADPNSADANGDRPKDVIVYPPKLEFVKISLEELLQTDDPSVGCNLRVITNSFNTYSPPLSASPENGSPSPPPDLLLRLKSIDVPISPAASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGINCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSGNGISHNSGAWPQPNIPALHLPGSNLQSSRLRSSLNARDIHMDEFDMLSDYDQQQQLINELACLSPHHLNSNSLSRSGRMKPLNPSNLDDLFSAESSSPRYADPTLNSTVFSPTHKSAVFNQFQQQQNMLSPVNTNFSPKNVDHHLLQAASYGVQPSGRMSPRNVEPISPMSSRMSMLAQRDKQQQFRSLSFREHGSNSMLAPPGSVNSWSKWESPNGKLDWAHNAEEVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLTTSIPNTAPAGTSGEGLNRNMNAQMDSADHAVLGTWLEQMQLDHLVAQQN 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04476 733 SUPERFAMILY Ankyrin repeat 44 176 IPR036770 -
Vivi6g04476 733 ProSiteProfiles Ankyrin repeat region circular profile. 122 156 - -
Vivi6g04476 733 Gene3D - 39 171 IPR036770 -
Vivi6g04476 733 SMART ANK_2a 40 70 IPR002110 GO:0005515
Vivi6g04476 733 SMART ANK_2a 122 154 IPR002110 GO:0005515
Vivi6g04476 733 SMART ANK_2a 87 117 IPR002110 GO:0005515
Vivi6g04476 733 ProSiteProfiles Zinc finger C3H1-type profile. 307 329 IPR000571 GO:0046872
Vivi6g04476 733 SMART c3hfinal6 302 328 IPR000571 GO:0046872
Vivi6g04476 733 SMART c3hfinal6 337 360 IPR000571 GO:0046872
Vivi6g04476 733 FunFam Zinc finger CCCH domain-containing protein 66 260 328 - -
Vivi6g04476 733 Gene3D - 303 365 - -
Vivi6g04476 733 PANTHER UNKEMPT FAMILY MEMBER 47 675 IPR045234 -
Vivi6g04476 733 Pfam Ankyrin repeats (3 copies) 48 156 IPR002110 GO:0005515
Vivi6g04476 733 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 327 IPR000571 GO:0046872
Vivi6g04476 733 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04476 Vivi-Chr6 146341180 146344588 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04476 39 726 C2H2 Transcription Factor Family AT5G12850 52.454 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi6g04476 Ank_2 3.4e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04476 - - ccaj:109796653 1141.33