Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04421 ATGGGAAATTGCTGTGCTACCCCTGCTGTAACAGGCGAAGACACAACCAACAAGAAAACCAAAAAGCCCAAAAAGGAGAACCCCTTCGCCATCGACTACGGTTTCAACACCAACAAAACCTCAAGCTCAAAACTCACCGTTTTGAAGGATCCAACCGGGCGCGAAATCGAAGCGCGTTACGAGCTCGGTCGAGAGCTCGGCCGAGGTGAATTCGGCGTGACGTATCTTTGTACAGACAAGGAAACCGGAGAGGAGCTAGCGTGTAAGTCGATTTCGAAGAAGAAGCTTAGAACTGCTATTGATATTGAGGATGTTAGGAGGGAAGTTGAAATCATGAAGCATATGCCGCCGCATGGTAATATTGTTACGTTGAAGGATACTTATGAGGATGATAATGCTGTGCATCTTGTTATGGAGCTTTGTGAAGGTGGAGAGCTTTTTGATCGGATTGTTGCCAGGGGGCACTATACTGAACGCGCTGCGGCGGCGGTGACGAAAACTATTGTGGAAGTTGTTCAGATGTGCCATAAACATGGTGTGATGCATAGAGATCTAAAGCCTGAGAATTTTTTGTTTGCGAATAAGAAGGAAACAGCGCCTTTGAAAGCCATCGATTTTGGTTTGTCGGTGTTCTTTAAACCAGGGGAAAGATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCGGAGGTATTGAAGAGAAATTATGGCCCGGAAGTAGATATCTGGAGTGCTGGAGTTATTCTATATATCTTACTTTGTGGTGTCCCTCCATTTTGGGCAGAAACTGAGCAAGGAGTTGCACAAGCAATTATACGATCTGTTGTCGATTTCAAAAGGGACCCATGGCCAAAAGTTTCGGATAATGCAAAAGATCTTGTGAAGAAGATGCTAAATCCTGACCCAAAACGACGACTTACTGCACAAGAAGTGTTGGATCATCCATGGTTAGTACATGCAAAGAAAGCATCCAACGTTTCGTTAGGAGAAACGGTTAGAGCAAGGTTAAAGCAGTTTTCCGTAATGAACAAGCTAAAGAAAAGAGCTTTAAGGGTTATTGCCGAGCATTTGTCGGTAGAAGAAGCAGCAGGACTAAAAGAGGGATTCAAGCTTATGGATACAAGCAACAAAGGCAAGATCAACATTGATGAACTACGGATAGGATTGCATAAACTCGGCCATCAAATTCCAGATGCCGATGTCCAAATTCTTATGGAAGCTGGTGATGTAGACAGGGATGGGTACCTAGATTATGGGGAGTATGTTGCGATTTCAGTTCATTTGAGAAAGATGGGAAATGATGAACATCTTCACAAAGCCTTTGATTTCTTTGATCAGAACCAAACTGGGTATATTGAGATTGATGAGCTTCGCAATGCATTATCCGACGAAATTGAAGATACAAATAGTGAAGAGGTCATTAGTGCAATTATGCATGACGTGGATACGGATAAGGACGGAAAGATAAGTTATGAAGAGTTCGCGAACATGATGAAGGCCGGGACAGATTGGAGAAAGGCATCAAGGCAGTATTCGCGAGAGAGGTTTAATAGTCTGAGCCTTAAATTGATGAAGGACGGGTCATTACAATTAAACAACGAAAAACAATGA 1614 0.4306 MGNCCATPAVTGEDTTNKKTKKPKKENPFAIDYGFNTNKTSSSKLTVLKDPTGREIEARYELGRELGRGEFGVTYLCTDKETGEELACKSISKKKLRTAIDIEDVRREVEIMKHMPPHGNIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAPLKAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLNPDPKRRLTAQEVLDHPWLVHAKKASNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLSVEEAAGLKEGFKLMDTSNKGKINIDELRIGLHKLGHQIPDADVQILMEAGDVDRDGYLDYGEYVAISVHLRKMGNDEHLHKAFDFFDQNQTGYIEIDELRNALSDEIEDTNSEEVISAIMHDVDTDKDGKISYEEFANMMKAGTDWRKASRQYSRERFNSLSLKLMKDGSLQLNNEKQ 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04421 537 Gene3D - 328 502 - -
Vivi6g04421 537 FunFam Calcium-dependent protein kinase 1 62 145 - -
Vivi6g04421 537 Pfam EF-hand domain pair 379 426 IPR002048 GO:0005509
Vivi6g04421 537 Gene3D Transferase(Phosphotransferase) domain 1 146 327 - -
Vivi6g04421 537 FunFam Calcium-dependent protein kinase 7 327 503 - -
Vivi6g04421 537 CDD EFh 437 500 IPR002048 GO:0005509
Vivi6g04421 537 MobiDBLite consensus disorder prediction 1 28 - -
Vivi6g04421 537 CDD STKc_CAMK 59 317 - -
Vivi6g04421 537 ProSiteProfiles Protein kinase domain profile. 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04421 537 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Vivi6g04421 537 Pfam Protein kinase domain 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04421 537 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Vivi6g04421 537 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Vivi6g04421 537 Pfam EF-hand domain pair 436 500 IPR002048 GO:0005509
Vivi6g04421 537 Gene3D Phosphorylase Kinase; domain 1 62 145 - -
Vivi6g04421 537 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Vivi6g04421 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Vivi6g04421 537 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509
Vivi6g04421 537 SMART efh_1 365 393 IPR002048 GO:0005509
Vivi6g04421 537 SMART efh_1 474 502 IPR002048 GO:0005509
Vivi6g04421 537 SMART efh_1 437 465 IPR002048 GO:0005509
Vivi6g04421 537 SMART efh_1 401 429 IPR002048 GO:0005509
Vivi6g04421 537 FunFam calcium-dependent protein kinase 13 146 326 - -
Vivi6g04421 537 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Vivi6g04421 537 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
Vivi6g04421 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 53 495 - -
Vivi6g04421 537 SMART serkin_6 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04421 537 SUPERFAMILY Protein kinase-like (PK-like) 59 324 IPR011009 -
Vivi6g04421 537 SUPERFAMILY EF-hand 347 526 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04421 Vivi-Chr6 145323992 145327885 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04421 1 535 EF-hand Containing Proteins AT5G19450 78.957 0.0 886
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vivi6g04421 Pkinase 7e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04421 K13412 - gmx:100790745 943.34