Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04410 ATGGGGACTCCCGAATTCCCAGATCTAGGCAAGCATTGTACAGTTTCCGATTGCAGACTCAACGATTTCTTACCCTTCACTTGCGATCGCTGCAATCAGGTATATTGTTTGGAGCACCGAAGTTATATAAAACATCATTGTACAAAACCCAACAGACAAGATGTCACTGTTGTTATATGTCCACTTTGCGCCAAAAGTGTTCGTTTAATTCCAGACAGAGATCCAAATGTGGTTTGGGAACATCATGTTAACACAGATTGTGACCCATCAAATTACGAAAAAGTCACAAAAAAGAAAAAGTGCCCTACCCAAGGATGCAGAGAGACACTAGTTTTCTCAAACACAATCAAGTGTAGGGATTGCGAAGTAGAACATTGTTTGAAACATAGGTTTGGACCTGATCATAAATGTCCAGGACCCAAAAAGTTGGAAACTAGTTTTTCATTCATGAGTCTTTTGAATTTGAGTAGTACTGGTAGTAGTAGTAAAGAAGAATCGAAATCTAATTCGACTTCGTCGAATTGGACTTCAAGCCTTCTTGAGTTGGCTTCTAAATGGAGTGGAAAAACTCAAGATGAGAAATGTCCACTTTGTGATGCGAAGTTTTCATCGGTTACTAGTTTGGTAGATCATGCGAAAAAAGTTCATGAAGGAAGTAGCATTACGCGAAATGGGGTAAAGAAGGTGTCGATTTCTGCGTGCCCGAAGTGTAGTAAAGGTTTTCTTGATCCGAATTCTCTTGTGGAGCATGTTGAGAGAGATCATGGTGGAAGTTCTTGA 780 0.4 MGTPEFPDLGKHCTVSDCRLNDFLPFTCDRCNQVYCLEHRSYIKHHCTKPNRQDVTVVICPLCAKSVRLIPDRDPNVVWEHHVNTDCDPSNYEKVTKKKKCPTQGCRETLVFSNTIKCRDCEVEHCLKHRFGPDHKCPGPKKLETSFSFMSLLNLSSTGSSSKEESKSNSTSSNWTSSLLELASKWSGKTQDEKCPLCDAKFSSVTSLVDHAKKVHEGSSITRNGVKKVSISACPKCSKGFLDPNSLVEHVERDHGGSS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04410 259 Gene3D Classic Zinc Finger 156 259 - -
Vivi6g04410 259 Pfam C2H2-type zinc finger 194 216 - -
Vivi6g04410 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 221 IPR013087 -
Vivi6g04410 259 Gene3D - 81 148 IPR035896 -
Vivi6g04410 259 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Vivi6g04410 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 259 IPR013087 -
Vivi6g04410 259 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 219 - -
Vivi6g04410 259 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Vivi6g04410 259 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Vivi6g04410 259 Gene3D - 2 58 IPR035896 -
Vivi6g04410 259 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Vivi6g04410 259 Pfam AN1-like Zinc finger 13 50 IPR000058 GO:0008270
Vivi6g04410 259 ProSitePatterns Zinc finger C2H2 type domain signature. 234 255 IPR013087 -
Vivi6g04410 259 ProSitePatterns Zinc finger C2H2 type domain signature. 195 216 IPR013087 -
Vivi6g04410 259 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
Vivi6g04410 259 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Vivi6g04410 259 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Vivi6g04410 259 SMART c2h2final6 232 255 IPR013087 -
Vivi6g04410 259 SMART c2h2final6 193 216 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04410 Vivi-Chr6 144669828 144670970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04410 1 259 C2H2 Transcription Factor Family AT2G41835 55.830 3.67e-105 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g04410 zf-AN1 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04410 - - gmx:100786272 373.244