Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04401 ATGGAAATTCTGTGCTTGTTGTATGTTATGTTGGGTATGTATCTTTCATTTGGTGAGTTTGTTGGTGCTGAGTTACAAGACCAAGCTATAATAGAAGCCATCAATCAAGAGCTAAGAGTTCCTGAATGGAGTGATGCAAACATTTCTGATTACTGTACATGGCAAGGGGTTTCATGTGGCAATCATTCAATGGTGGAGAAGCTTGATCTTTCTCACAGAAGCCTGAGAGGTAATGTGAGTTTAATCTCTGAGCTCAAAAGTTTGAAGTTGCTTGATCTTTCTAATAATAACTTTGGTGGATTGATTCCTCTTGCTTTTGGAGATTTGTCTGAGCTTGAAGTTCTTGATTTGTCTTCTAATAAGTTTGAAGGTTCAATTCCATCACAGTTTGGTGATCTCAGAAGCTTAAAATCATTGAACATTTCTAATAATTTGCTTGTTGGTGAGTTACCAATGGAACTTCATGGTTTGAAGAAATTGCAGGATTTACAACTTTCTAGTAATCAATTGAGTGGTTTTATACCTTCTTGGGTGGGGAATTTAACCGATTTGAGAGTTTTTTCGGCGTATGAGAATCGTTTAGATGGTAGGATTCCAGATAATCTAGGTTTGATTCCTGAACTTCAGATTCTTAACTTGCATTCTAACCAGCTTGAAGGTCCGATACCAGCAAGCATTTTCGCTTCGGGGAAGCTAGAAGTTCTGGTTCTTACTCAGAATAATTTTAGTGGCGATCTTCCGGAGGAAATTGGGAACTGTCGTGGCCTTTCGAGCGTTAGAATTGGAAACAACCATCTTGTAGGTACTATTCCTAAGACCATTGGAAATCTTAGTAGCCTGACATATTTCGAAGCCGATAATAATAATCTTTCTGGTGAGGTAGTGTCGGAGTTTGCACGGTGTTCTAATCTCACCCTTTTGAATTTAGCTTCAAATGGATTTTCCGGGACGATTCCACAAGAGTTTGGACAACTTATGAATCTTCAGGAATTAATTTTGTCAGGAAATGGCCTATTTGGTGATATTCCAAAACCAATTCTCAGTTGTAAAAGCCTCAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACGATACCGAACGAAATCTGCAATATTTCTCGGTTGCAGTACTTGTTATTGAATCTGAATTCCATAAGAGGAGAGATCCCTCATGAAATTGGAAGCTGTGCAAAACTCCTTGAATTACAGTTAGGGAGTAATTATTTGACTGGAACTATTCCTCCTGAGATCGGTCGCATCAGGAACTTACAGATAGCTTTGAATTTGAGCTTCAATCATCTCCACGGACCACTTCCGCCAGAATTGGGAAAACTGGATAAACTTGTTTCTCTTGATGTTTCGAATAATCGGCTATCAGGTAATATCCCAACCGAGCTTAAGGGAATGTTGAGCTTGATAGAGGTGAATTTCTCGAATAATCTATTTGGAGGCCCTGTGCCAACATTTGTACCGTTCCAGAAGAGTCCTAGTTCGAGTTTTGTAGGAAATAAAGGGCTTTGTGGAGATCCATTGAACTCTTCATGTGGGAATATTTATGATGATCACAGTAATTACCATCATAAGGTTTCTTACAGAATCGTATTGGCGGTAATTGGTTCTGGTTTGGCAGTTTTTATATCAGTAACTATAGTTGTCTTGCTGTTTATGATCAGAGAGAGGCAAGAAAAAGCAGCTAAAGAGGCTGCTGGTATTGTTGATGATCCAACCGATGACAAACCAACTATCATAGCAGGGACGGTTTTTGTTGATAATCTACAACAAGCGATAGACCTCGACGCTGTTGTTAACGCAACGCTGAAAGACTCGAATAAACTCAGCAGCGGAACTTTCAGCTCAGTTTACAAAGCAACCATGCCTTCTGGTGTGGTTATATCTGTCAGGAGACTGAAATCTGTGGACAAAACTATAATCCACCATCAGAACAAGATGATTCGAGAACTCGAAAGGCTAAGCAAGGTTTGTCACGATAATCTCGTGCGACCTATCGGCTATGTCATTTACGAAGATGTTGCTCTTCTCTTGCATAATTATTTTCCTAATGGAACATTGTCTCAGCTTCTTCATGAATCTACAAAGCAACCTGAATATCAGCCTGATTGGCCAGCTAGGCTATCCATCGCCATCGGTGTCGCAGAAGGCTTGGCTTTCCTTCATCATGTGGCAATTATCCATCTTGACATTTCTTCTGGCAATGTTCTTTTGGATGCAAACTTCAAACCATTGGTTGGAGAGATTGAGATTTCAAAACTTCTTGATCCAACCAGAGGAACTGGAAGTATTAGTGCAGTTGCCGGTTCCTTCGGTTACATACCTCCAGAATATGCATACACCATGCAAGTGACAGCACCGGGAAATGTTTACAGCTACGGCGTTGTATTGTTGGAAATCCTTACATCTCGACAACCTGTTGAAGAAGATTTCGGCGAAGGCGTAGATTTGGTGAAGTGGGTTCAAAGTGCTCCTGTAAGAGGCGAAACTCCAGAGCAGATACTTGATGCAAGGCTTAGCACGGTTTCCTTCGGTTGGAGGAAAGAAATGCTTGCTGCTCTAAAGGTTGCGTTGCTCTGCACCGACGGCACACCAGCCAAACGACCGAAAATGAAGAATGTAATTGAAATGCTTCGGGAAATTAAGTAA 2661 0.407 MEILCLLYVMLGMYLSFGEFVGAELQDQAIIEAINQELRVPEWSDANISDYCTWQGVSCGNHSMVEKLDLSHRSLRGNVSLISELKSLKLLDLSNNNFGGLIPLAFGDLSELEVLDLSSNKFEGSIPSQFGDLRSLKSLNISNNLLVGELPMELHGLKKLQDLQLSSNQLSGFIPSWVGNLTDLRVFSAYENRLDGRIPDNLGLIPELQILNLHSNQLEGPIPASIFASGKLEVLVLTQNNFSGDLPEEIGNCRGLSSVRIGNNHLVGTIPKTIGNLSSLTYFEADNNNLSGEVVSEFARCSNLTLLNLASNGFSGTIPQEFGQLMNLQELILSGNGLFGDIPKPILSCKSLNKLDISNNRFNGTIPNEICNISRLQYLLLNLNSIRGEIPHEIGSCAKLLELQLGSNYLTGTIPPEIGRIRNLQIALNLSFNHLHGPLPPELGKLDKLVSLDVSNNRLSGNIPTELKGMLSLIEVNFSNNLFGGPVPTFVPFQKSPSSSFVGNKGLCGDPLNSSCGNIYDDHSNYHHKVSYRIVLAVIGSGLAVFISVTIVVLLFMIRERQEKAAKEAAGIVDDPTDDKPTIIAGTVFVDNLQQAIDLDAVVNATLKDSNKLSSGTFSSVYKATMPSGVVISVRRLKSVDKTIIHHQNKMIRELERLSKVCHDNLVRPIGYVIYEDVALLLHNYFPNGTLSQLLHESTKQPEYQPDWPARLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTRGTGSISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTSRQPVEEDFGEGVDLVKWVQSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDGTPAKRPKMKNVIEMLREIK 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04401 886 Gene3D Phosphorylase Kinase; domain 1 579 685 - -
Vivi6g04401 886 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 577 685 - -
Vivi6g04401 886 PRINTS Leucine-rich repeat signature 109 122 - -
Vivi6g04401 886 PRINTS Leucine-rich repeat signature 88 101 - -
Vivi6g04401 886 ProSitePatterns Tyrosine protein kinases specific active-site signature. 730 742 IPR008266 GO:0004672|GO:0006468
Vivi6g04401 886 Gene3D Ribonuclease Inhibitor 28 135 IPR032675 -
Vivi6g04401 886 Gene3D Ribonuclease Inhibitor 229 518 IPR032675 -
Vivi6g04401 886 ProSiteProfiles Protein kinase domain profile. 607 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04401 886 Gene3D Transferase(Phosphotransferase) domain 1 686 886 - -
Vivi6g04401 886 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Vivi6g04401 886 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 279 886 - -
Vivi6g04401 886 Gene3D Ribonuclease Inhibitor 150 228 IPR032675 -
Vivi6g04401 886 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 686 886 - -
Vivi6g04401 886 SUPERFAMILY L domain-like 39 293 - -
Vivi6g04401 886 SMART LRR_typ_2 109 132 IPR003591 -
Vivi6g04401 886 SMART LRR_typ_2 373 397 IPR003591 -
Vivi6g04401 886 SMART LRR_typ_2 205 229 IPR003591 -
Vivi6g04401 886 SMART LRR_typ_2 325 349 IPR003591 -
Vivi6g04401 886 SMART LRR_typ_2 85 108 IPR003591 -
Vivi6g04401 886 SMART LRR_typ_2 157 181 IPR003591 -
Vivi6g04401 886 SMART LRR_typ_2 446 469 IPR003591 -
Vivi6g04401 886 CDD STKc_IRAK 613 885 - -
Vivi6g04401 886 SUPERFAMILY L domain-like 257 512 - -
Vivi6g04401 886 Pfam Protein tyrosine and serine/threonine kinase 610 881 IPR001245 GO:0004672|GO:0006468
Vivi6g04401 886 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 230 519 - -
Vivi6g04401 886 SUPERFAMILY Protein kinase-like (PK-like) 607 883 IPR011009 -
Vivi6g04401 886 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 56 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04401 Vivi-Chr6 144544382 144548520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04401 1 886 Receptor kinase-like Gene Family AT2G41820 72.748 0.0 1305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi6g04401 PK_Tyr_Ser-Thr 3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04401 - - gmx:100789684 1508.81