Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04389 ATGGCTGAATCATTTCTGTTTGATATTGCTGATTCACTGCTTAGAAAGCTTGCTTCTTATATTTGTCAAGAAGCTTCTCAAGCCTATGGTGTTTATGAAGATCTCCAGGGGATCAAAGATACTCTATCAATTGTCAGAGGTCTTCTATTGGATGCAGAGGAGAAGAAGGACCATCAACATGCCTTGCGCGAATGGCTGAGACAGATTCATAACATTTGTTCTGATGCTGAAGATGTATTGGATGGAGTTGAGTTGCAACACAAGAGAAAGCAAGTTGTGGAAGCTTCGGGAAGCTCAAGGATGAAGGTACGCCACTTCTTATCCTCTTCGAATCCACTTGCTTTCCGTTTAATCATGGCACGTCAAATCAAGAAGATTAGGGATAGATTGGATAAGGTAGCTGTTGATGGAACCAGGTTTGGTCTTGCTGCAATAAGTATTGATCCTGGAATTGTTGTTCAAAGGAGAAAAATCACTCATTCCTATATTGATGCTTTAGATGTGATTGGAAGGGAGAACGATAGGGAAGAAATTGTTAAGCTTTTAATGCAACCTCACCCTCAGGGTGATGGTCATGGTGATCACAGTTTGTGTGTTATTCCCATAGTAGGAATTGGAGGATTGGGGAAGACAACACTTGCTAAGTTGGTATTCAACGATGAGAGAATGGATGAACTTTTTCAATTGAAGATATGGGTGTGTGTCTCTAATGATTTTGACATCAGGCAGCTAATAATAAAAATCATCAACTCTGCTTATGCTTCAGCTTCAGTTCCTACGGCCGCGGCTATTGCTCACCAAGAAAACATTTACAACTTTGATATTGAGCAACTACAGAGTCGTCTTCGATATAAGCTTTCTGGTCAAAAGTTTTTGCTTGTACTTGATGATATATGGAATGAAGATCGTGCAAATTGGATTAAATTAAAAGAATTAATAAAAGGTGGTGCACTAGGAAGCAAAATCATAGTAACAACACGTAGTAAATCAATTGCTTCAATGATGGGTACGTTTCCCTCGTATATTTTAGAAGGTCTGTCTCATGAGAGTTGTTTATCTCTGTTTGTCAAATGGGCATTTAAGGAAGGTGAAGAAGAGAAATATCCAAACCTAATGGAGATCGGAAAACAAATTGTAAGAAAATGTCGAGGGGTTCCACTAGCAGTGAGAACATTAGGAAGTTCTTTGTTCTCGAAATTTGATTTAAATAAGTGGAAATTTGTTAGAGACTCTGAGATATGGAATTTAAAACAAAATGAAGATGACATTTTACCCGCGCTTAAGTTAAGTTATGACCAATTGCCATCTCATTTGAGGCATTGTTTCACATACTTTTCACTTTATCCAAAAGACTTTGGCTTCACAAGTGTTCAAATCACTAAACTCTGGATGGCACTGGGATTACTACAATCACAAGATGGAAATCAAAGGCTGGAAAATATTGCAAGTGGTTATATAGATGAGTTGCATTCAAGGTCATTTCTTCAAGATTTTGAGGACTTTGGCCACTTTTACTATTTCAAAGTACACGATTTGGTGCATGATCTTGCTATGTATGTGGCAAAAGATGAGTGTGTAGTAGTTGACTCCCGTACTCAGAATATATCTCAGCAAGTAAGGCATTTCTCAATTGTTGAAAATGGTCCACTTAGTGCTTTATTCCCCAAATCCAAATGTGTGAGAACTATACTATTTCCCATCAAAGGATGTGGCCTTGGCAGTCAATCTTTGTTGAATGCATGGATATTAAGATACAAATATTTACGGATTTTAGATTTGAGTGATTCTTCGTTTGAGACTCTACCCAATTCAATTTCTAAATTGGAGCACTTGCGTGTTCTCAATCTTTCTGATAACTGCAGTATCAAAATACTTCCCCTTTCTATTTGCAAACTCCAATGTTTGCAAGTTTTGTCACTCAGTGGTTGCATGAATCTTGAAACATTGCCAAAAGAGTTAGGTAAACTAATCAGCCTTCGGCAACTGTATATAACCACAAAGCAATCTGTCATGTCACTAGACGAATTTGTAAGCTTGAGCAATCTTCAAACTCTAAGCTTTGAATATTGTGACAATTTGAAGGTTTTGCTCGGAGAGGTAGAACTCGCTTCCCTTGAAGCATTGATTGTTCGTTGTTGTGGAAGCCTTGTATCCTTACCTCTCCGTAGTCTCTCTAAACTAGAGGCTTTGCTAGTCATAGATTGTATGAAGCTTGATCTCAGTCTGACAGAGAATCTTCAAAACACAACAAAAAGATGGAGGATGAGTTTTCTTCATCTTGAGAATTTTCCAAGGCTACAGACATTGCCTGACTGGATTGAAGGAGCTGCAGGGACATTACAGACCTTGATAATTATTAATATTCCTACGCTTTGGAAACTTCCCGACAGTTTGATAATAATGGCTCGCCTTAAAATGCTTCATATTGCCGGCTGTCCTCGTTTGCATCGGCTTCCAAGGGGCATGCGACTCCTCACTTCCCTTGAGGCTTTGACCATAGATGGTTGTCCTGAATTATGTCAAAAATATCAACCGTGTTCTGGTCAATACTGGCCCGTGATTTCTCACATTAAACGTGTTTTCATTGGATAA 2592 0.3862 MAESFLFDIADSLLRKLASYICQEASQAYGVYEDLQGIKDTLSIVRGLLLDAEEKKDHQHALREWLRQIHNICSDAEDVLDGVELQHKRKQVVEASGSSRMKVRHFLSSSNPLAFRLIMARQIKKIRDRLDKVAVDGTRFGLAAISIDPGIVVQRRKITHSYIDALDVIGRENDREEIVKLLMQPHPQGDGHGDHSLCVIPIVGIGGLGKTTLAKLVFNDERMDELFQLKIWVCVSNDFDIRQLIIKIINSAYASASVPTAAAIAHQENIYNFDIEQLQSRLRYKLSGQKFLLVLDDIWNEDRANWIKLKELIKGGALGSKIIVTTRSKSIASMMGTFPSYILEGLSHESCLSLFVKWAFKEGEEEKYPNLMEIGKQIVRKCRGVPLAVRTLGSSLFSKFDLNKWKFVRDSEIWNLKQNEDDILPALKLSYDQLPSHLRHCFTYFSLYPKDFGFTSVQITKLWMALGLLQSQDGNQRLENIASGYIDELHSRSFLQDFEDFGHFYYFKVHDLVHDLAMYVAKDECVVVDSRTQNISQQVRHFSIVENGPLSALFPKSKCVRTILFPIKGCGLGSQSLLNAWILRYKYLRILDLSDSSFETLPNSISKLEHLRVLNLSDNCSIKILPLSICKLQCLQVLSLSGCMNLETLPKELGKLISLRQLYITTKQSVMSLDEFVSLSNLQTLSFEYCDNLKVLLGEVELASLEALIVRCCGSLVSLPLRSLSKLEALLVIDCMKLDLSLTENLQNTTKRWRMSFLHLENFPRLQTLPDWIEGAAGTLQTLIIINIPTLWKLPDSLIIMARLKMLHIAGCPRLHRLPRGMRLLTSLEALTIDGCPELCQKYQPCSGQYWPVISHIKRVFIG 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04389 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 444 IPR027417 -
Vivi6g04389 863 CDD RX-CC_like 2 134 IPR038005 -
Vivi6g04389 863 Pfam Rx N-terminal domain 12 98 IPR041118 -
Vivi6g04389 863 Gene3D - 10 124 - -
Vivi6g04389 863 PANTHER DISEASE RESISTANCE PROTEIN RP 55 769 IPR044974 GO:0006952
Vivi6g04389 863 FunFam Probable disease resistance protein At1g63360 431 519 - -
Vivi6g04389 863 PRINTS Disease resistance protein signature 199 214 - -
Vivi6g04389 863 PRINTS Disease resistance protein signature 630 646 - -
Vivi6g04389 863 PRINTS Disease resistance protein signature 382 396 - -
Vivi6g04389 863 PRINTS Disease resistance protein signature 285 299 - -
Vivi6g04389 863 Pfam Leucine rich repeat 587 643 IPR001611 GO:0005515
Vivi6g04389 863 SUPERFAMILY L domain-like 508 856 - -
Vivi6g04389 863 Gene3D Ribonuclease Inhibitor 531 850 IPR032675 -
Vivi6g04389 863 ProSiteProfiles Leucine-rich repeat profile. 610 631 IPR001611 GO:0005515
Vivi6g04389 863 Gene3D - 425 519 IPR036388 -
Vivi6g04389 863 Gene3D - 152 338 IPR027417 -
Vivi6g04389 863 Pfam NB-ARC domain 193 432 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04389 Vivi-Chr6 144421618 144427890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04389 200 839 WRKY Transcription Factor Family AT5G45050 22.422 6.07e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04389 - - gmx:100794422 1174.46