Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04388 ATGGCTGAATCATTTGTGTTTGATATTGCTGATTCACTTCTTGGAAAGCTTGCTTCATATGTTTGTGAAGAAGCTTCTCGAGCCTATGGTGTTTATGAAGATCTTCAAGAAATCAAAGACACTCTATCAATTGTCAGAGGACTTCTATTGGATGCTGAAGAAAAGAAGAACCAACAACATGTCTTGCGTGAATGGATGAGACAGATTCAAAACATTTGTTCTGATGCTGAAAATGTATTCGATGGATTCGAGTTGCAACACAAAAAAAAGCAAGTTCTAGAAGCTTCTAGCAGCACAAGGATGAAGGTAAGGCATTTCTTATCTCCTTCTAATCCCCTTGTTTTCCGTCCTAAGATGGCACATCAAATCAAAGAGATTAAGGATAGATTGGATAAGGTAGCTGCTGATGGAACCAGGTTTGGTCTTGCAACAATCAATGTTGTTCCTGGACTTGTTCTGCAAGGAAGAGAAATGACTCACTCCCATGTTGATGCTTTAGATGTTATAGGAAGGGAGCATGAGAGGGAAGATATTGTCAAGCTTTTAATGCAACCTCATCCTCAAGGTGACGGTGATGGTGATAAAAGTCTGTGTGTTATTCCCATAGTTGGAATTGGAGGATTGGGGAAGACCGCACTTGCTAAGTTGGTATTCAATGATAAGAGAATGGATGAACTGTTCCAATTGAAGATATGGGTGTGTGTCTCTAATGATTTTGACATCAGGCAGCTAATAATAAAAGTCGTCAACTCTGCTTATGCTTCAGATTCAGTTCCTGCGGCCGCGGCTCTTGCTCACCAAGAAAACATTAACAACTTTGATATTGAGCAACTACAAAAACGTCTTCGATATAAACTTTCTCGTCAAAAGTTTTTGCTTGTATTGGATGATATTTGGAACGAAGATCGTGCAGAATGGATTAAATTCAAAGACTTAATAAAAGTTGGTGCACCTGGAAGCAAAATCATAGCAACAACTCGTAGTAACTCAATTGCTTCAATGATGGGTACGTTTCCCTCGTATGTCTTAGAAGGTCTTTCACATGAAAATTGTTTATCCTTGTTTGTCAAATGGGCATTTAAGGAAGGTGAAGAAGATAAATATCCAAATCTAATGGAGATCGGAAAACAAATTGTGAGAAAATGTCAAGGAGTTCCACTAGCAGTGAGAACATTAGGAAGCTCTTTGTTCTCGAAATTTGATGTAAGTAAGTGGAAATTTGTTAGAGACTCAGAGATATGGAATTTGAGACAAAACAAAGATGACATTTTACCTGCACTTAAGTTAAGCTATGATCAATTGCCTTCTCATTTGCGGCATTGTTTCACATACTTTTCACTTTATCCAAAAGATTTCGGCTTCACAGGTGTTGAAATCACTAAACTCTGGGTGGCACTGGGATTACTACAATCACAAGATGGAAATCAAAGGCTGGAGAATATTGCAAGAGATTACATAGATGAGTTACGTTCAAGATCATTTCTTCAAGATTTTGAGGACTTTGGGCACTTCTACAATTTCAAAGTACATGATTTGGTGCATGATCTTTCATTGTATATTGCGAAAGATGAGTGTGTAGTAGTTGACTCAAATACTCGGAATATATCTCAGCAAGTAAGGCATTTCTCAATGGTTGAAAATGGTTCACTTAGTGCTTTATTCCCCAAATCCAAAAGTGTGAGAACTATACTATTTCCCATCGAAGGAGTGGGCGTTGACAATGAATCTTTGTTGGATGCGTCAATATTAAGATACAAATATTTACGGATTTTAGATTTGAGTGATTCTTCATTTGAGACTCTGCCCAATTCAATTGCTAAATTGGAGCACTTGCGTGTTCTCAATCTCTCTGATAACTGCAATATCAAAAGACTTCCCCATTCTATTTGCAAACTGCAATGTTTGCAAGTTTTGTCACTGAGTGGTTGCATGAATCTTGAAACATTGCCTAAAGGGTTAGATAAACTAATCAGCCTTCGACAACTGTATATAACCACAAAGCAATCTGTCCTTTCACTAGATGAATTTGCAAGCTTGAGCAATCTTCAAACACTGAGCTTTGAATATTGTGATAATTTGAAGGTTTTGCACGGAGAGATGCAACTTGCTACCCTTGAAGTATTGATTGTTCGTTCTTGTTCAAGACTTATATCCTTACCTCGTTGTAGTCTATCTGAATTAGAGGCTCTACTAGTCTCTGATTGTAAGATGCTACAGTTCGGACTGCCAGAGAATCTTCAAAGCAAAACGAAAAGATGGAGGATGAATTTTCTTCTTCTTGATAATTTTCCAGAGCTACATACATTGCCAGAGTGGATTGAAAGAGCCGCAGAGACTTTACAGACCTTGATAATTTCAAATTTTCCAATGCTTCAGAGGCTTCCCGAGTGTTTGACGAGAATGACTCATCTTAAATTGCTCTATATTGCCGACTGTCCTCTTTTGGATTCTCTTCCAAACGGCATGCAACACCTCACTTCCCTTGATGATTTGACCATAGATGATTGTCCTAAATTATGTCGAAAATGTCAAGCAAGTTTTGGGGAGTACTGGCCCATGATTTCTCACATTAAACGTGTTTCCATTGGAGAACCAGAAAAAGAGGAGCGCCATGAAAGAGGGGGGTCTGTCTTTGGCAACACTGATCTACTACCGTACCTTTGGTCTGAGGTTGTGGAAGGGAAATGA 2688 0.3854 MAESFVFDIADSLLGKLASYVCEEASRAYGVYEDLQEIKDTLSIVRGLLLDAEEKKNQQHVLREWMRQIQNICSDAENVFDGFELQHKKKQVLEASSSTRMKVRHFLSPSNPLVFRPKMAHQIKEIKDRLDKVAADGTRFGLATINVVPGLVLQGREMTHSHVDALDVIGREHEREDIVKLLMQPHPQGDGDGDKSLCVIPIVGIGGLGKTALAKLVFNDKRMDELFQLKIWVCVSNDFDIRQLIIKVVNSAYASDSVPAAAALAHQENINNFDIEQLQKRLRYKLSRQKFLLVLDDIWNEDRAEWIKFKDLIKVGAPGSKIIATTRSNSIASMMGTFPSYVLEGLSHENCLSLFVKWAFKEGEEDKYPNLMEIGKQIVRKCQGVPLAVRTLGSSLFSKFDVSKWKFVRDSEIWNLRQNKDDILPALKLSYDQLPSHLRHCFTYFSLYPKDFGFTGVEITKLWVALGLLQSQDGNQRLENIARDYIDELRSRSFLQDFEDFGHFYNFKVHDLVHDLSLYIAKDECVVVDSNTRNISQQVRHFSMVENGSLSALFPKSKSVRTILFPIEGVGVDNESLLDASILRYKYLRILDLSDSSFETLPNSIAKLEHLRVLNLSDNCNIKRLPHSICKLQCLQVLSLSGCMNLETLPKGLDKLISLRQLYITTKQSVLSLDEFASLSNLQTLSFEYCDNLKVLHGEMQLATLEVLIVRSCSRLISLPRCSLSELEALLVSDCKMLQFGLPENLQSKTKRWRMNFLLLDNFPELHTLPEWIERAAETLQTLIISNFPMLQRLPECLTRMTHLKLLYIADCPLLDSLPNGMQHLTSLDDLTIDDCPKLCRKCQASFGEYWPMISHIKRVSIGEPEKEERHERGGSVFGNTDLLPYLWSEVVEGK 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04388 895 Gene3D - 345 435 IPR042197 -
Vivi6g04388 895 Pfam NB-ARC domain 194 432 IPR002182 GO:0043531
Vivi6g04388 895 CDD RX-CC_like 2 134 IPR038005 -
Vivi6g04388 895 SUPERFAMILY L domain-like 508 856 - -
Vivi6g04388 895 PANTHER DISEASE RESISTANCE PROTEIN RP 36 767 IPR044974 GO:0006952
Vivi6g04388 895 Gene3D - 10 124 - -
Vivi6g04388 895 FunFam Probable disease resistance protein At1g63360 431 519 - -
Vivi6g04388 895 Gene3D - 156 338 IPR027417 -
Vivi6g04388 895 Pfam Leucine rich repeat 587 643 IPR001611 GO:0005515
Vivi6g04388 895 Pfam Rx N-terminal domain 12 100 IPR041118 -
Vivi6g04388 895 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 444 IPR027417 -
Vivi6g04388 895 Gene3D Ribonuclease Inhibitor 526 862 IPR032675 -
Vivi6g04388 895 PRINTS Disease resistance protein signature 382 396 - -
Vivi6g04388 895 PRINTS Disease resistance protein signature 199 214 - -
Vivi6g04388 895 PRINTS Disease resistance protein signature 285 299 - -
Vivi6g04388 895 PRINTS Disease resistance protein signature 630 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04388 Vivi-Chr6 144409787 144413137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04388 200 839 WRKY Transcription Factor Family AT5G45050 21.461 1.93e-11 66.2