Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04387 ATGAGACAGATTCAAAACATTTGTTCTGATGCTGAAAATGTATTCGATGGATTCGAGTTGCAACACAAAAAAAAGCAAGTTCTAGAAGCTTCTAGCAGCACAAGGATGAAGGTAAGGCATTTCTTATCTCCTTCTAATCCCCTTGTTTTCCGTCCTAAGATGGCACATCAAATCAAAGAGATTAAGGATAGATTGGATAAGGTAGCTGCTGATGGAACCAGGTTTGGTCTTGCAACAATCAATGTTGTTCCTGGACTTGTTCTGCAAGGAAGAGAAATGACTCACTCCCATGTTGATGCTTTAGATGTTATAGGAAGGGAGCATGAGAGGGAAGATATTGTCAAGCTTTTAATGCAACCTCATCCTCAAGGTGACGGTGATGGTGATAAAAGTCTGTGTGTTATTCCCATAGTTGGAATTGGAGGATTGGGGAAGACCGCACTTGCTAAGTTGGTATTCAATGATAAGAGAATGGATGAACTGTTCCAATTGAAGATATGGGTGTGTGTCTCTAATGATTTTGACATCAGGCAGCTAATAATAAAAGTCGTCAACTCTGCTTATGCTTCAGATTCAGTTCCTGCGGCCGCGGCTCTTGCTCACCAAGAAAACATTAACAACTTTGATATTGAGCAACTACAAAAACGTCTTCGATATAAACTTTCTCGTCAAAAGTTTTTGCTTGTATTGGATGATATTTGGAACGAAGATCGTGCAGAATGGATTAAATTCAAAGACTTAATAAAAGTTGGTGCACCTGGAAGCAAAATCATAGCAACAACTCGTAGTAACTCAATTGCTTCAATGATGGGTACGTTTCCCTCGTATGTCTTAGAAGGTCTTTCACATGAAAATTGTTTATCCTTGTTTGTCAAATGGGCATTTAAGGAAGGTGAAGAAGATAAATATCCAAATCTAATGGAGATCGGAAAACAAATTGTGAGAAAATGTCAAGGAGTTCCACTAGCAGTGAGAACATTAGGAAGCTCTTTGTTCTCGAAATTTGATGTAAGTAAGTGGAAATTTGTTAGAGACTCAGAGATATGGAATTTGAGACAAAACAAAGATGACATTTTACCTGCACTTAAGTTAAGCTATGATCAATTGCCTTCTCATTTGCGGCATTGTTTCACATACTTTTCACTTTATCCAAAAGATTTCGGCTTCACAGGTGTTGAAATCACTAAACTCTGGGTGGCACTGGGATTACTACAATCACAAGATGGAAATCAAAGGCTGGAGAATATTGCAAGAGATTACATAGATGAGTTACGTTCAAGATCATTTCTTCAAGATTTTGAGGACTTTGGGCACTTCTACAATTTCAAAGTACATGATTTGGTGCATGATCTTTCATTGTATATTGCGAAAGATGAGTGTGTAGTAGTTGACTCAAATACTCGGAATATATCTCAGCAAGTAAGGCATTTCTCAATGGTTGAAAATGGTTCACTTAGTGCTTTATTCCCCAAATCCAAAAGTGTGAGAACTATACTATTTCCCATCGAAGGAGTGGGCGTTGACAATGAATCTTTGTTGGATGCGTCAATATTAAGATACAAATATTTACGGATTTTAGATTTGAGTGATTCTTCATTTGAGACTCTGCCCAATTCAATTGCTAAATTGGAGCACTTGCGTGTTCTCAATCTCTCTGATAACTGCAATATCAAAAGACTTCCCCATTCTATTTGCAAACTGCAATGTTTGCAAGTTTTGTCACTGAGTGGTTGCATGAATCTTGAAACATTGCCTAAAGGGTTAGATAAACTAATCAGCCTTCGACAACTGTATATAACCACAAAGCAATCTGTCCTTTCACTAGATGAATTTGCAAGCTTGAGCAATCTTCAAACACTGAGCTTTGAATATTGTGATAATTTGAAGGTTTTGCACGGAGAGATGCAACTTGCTACCCTTGAAGTATTGATTGTTCGTTCTTGTTCAAGACTTATATCCTTACCTCGTTGTAGTCTATCTGAATTAGAGGCTCTACTAGTCTCTGATTGTAAGATGCTACAGTTCGGACTGCCAGAGAATCTTCAAAGCAAAACGAAAAGATGGAGGATGAATTTTCTTCTTCTTGATAATTTTCCAGAGCTACATACATTGCCAGAGTGGATTGAAAGAGCCGCAGAGACTTTACAGACCTTGATAATTTCAAATTTTCCAATGCTTCAGAGGCTTCCCGAGTGTTTGACGAGAATGACTCATCTTAAATTGCTCTATATTGCCGACTGTCCTCTTTTGGATTCTCTTCCAAACGGCATGCAACACCTCACTTCCCTTGATGATTTGACCATAGATGATTGTCCTAAATTATGTCGAAAATGTCAAGCAAGTTTTGGGGAGTACTGGCCCATGATTTCTCACATTAAACGTGTTTCCATTGGAGAACCAGAAAAAGAGGAGCGCCATGAAAGAGGGGGGTCTGTCTTTGGCAACACTGATCTACTACCGTACCTTTGGTCTGAGGTTGTGGAAGGGAAATGA 2493 0.3859 MRQIQNICSDAENVFDGFELQHKKKQVLEASSSTRMKVRHFLSPSNPLVFRPKMAHQIKEIKDRLDKVAADGTRFGLATINVVPGLVLQGREMTHSHVDALDVIGREHEREDIVKLLMQPHPQGDGDGDKSLCVIPIVGIGGLGKTALAKLVFNDKRMDELFQLKIWVCVSNDFDIRQLIIKVVNSAYASDSVPAAAALAHQENINNFDIEQLQKRLRYKLSRQKFLLVLDDIWNEDRAEWIKFKDLIKVGAPGSKIIATTRSNSIASMMGTFPSYVLEGLSHENCLSLFVKWAFKEGEEDKYPNLMEIGKQIVRKCQGVPLAVRTLGSSLFSKFDVSKWKFVRDSEIWNLRQNKDDILPALKLSYDQLPSHLRHCFTYFSLYPKDFGFTGVEITKLWVALGLLQSQDGNQRLENIARDYIDELRSRSFLQDFEDFGHFYNFKVHDLVHDLSLYIAKDECVVVDSNTRNISQQVRHFSMVENGSLSALFPKSKSVRTILFPIEGVGVDNESLLDASILRYKYLRILDLSDSSFETLPNSIAKLEHLRVLNLSDNCNIKRLPHSICKLQCLQVLSLSGCMNLETLPKGLDKLISLRQLYITTKQSVLSLDEFASLSNLQTLSFEYCDNLKVLHGEMQLATLEVLIVRSCSRLISLPRCSLSELEALLVSDCKMLQFGLPENLQSKTKRWRMNFLLLDNFPELHTLPEWIERAAETLQTLIISNFPMLQRLPECLTRMTHLKLLYIADCPLLDSLPNGMQHLTSLDDLTIDDCPKLCRKCQASFGEYWPMISHIKRVSIGEPEKEERHERGGSVFGNTDLLPYLWSEVVEGK 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04387 830 PRINTS Disease resistance protein signature 220 234 - -
Vivi6g04387 830 PRINTS Disease resistance protein signature 565 581 - -
Vivi6g04387 830 PRINTS Disease resistance protein signature 317 331 - -
Vivi6g04387 830 PRINTS Disease resistance protein signature 134 149 - -
Vivi6g04387 830 Pfam Leucine rich repeat 522 578 IPR001611 GO:0005515
Vivi6g04387 830 Pfam NB-ARC domain 129 367 IPR002182 GO:0043531
Vivi6g04387 830 Gene3D - 91 273 IPR027417 -
Vivi6g04387 830 PANTHER DISEASE RESISTANCE PROTEIN RP 3 683 IPR044974 GO:0006952
Vivi6g04387 830 Gene3D - 280 370 IPR042197 -
Vivi6g04387 830 FunFam Probable disease resistance protein At1g63360 366 454 - -
Vivi6g04387 830 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 379 IPR027417 -
Vivi6g04387 830 Gene3D Ribonuclease Inhibitor 461 797 IPR032675 -
Vivi6g04387 830 SUPERFAMILY L domain-like 443 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04387 Vivi-Chr6 144409787 144413319 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04387 135 774 WRKY Transcription Factor Family AT5G45050 21.461 1.25e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04387 - - gmx:100812584 1082.01