Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04377 ATGGCGTCTTCTTCCTCCGATCCCGGAAAGTCCGCGGAGACAGCAGAAGCTCTGGTGGCGGCGAACGATCAGCTTTTACTGTACAGAGGATTGAAGAAAGCGAAGAAAGAGAGAGGCTGTACTGCCAAAGAACGAATCAGTAAAATGCCTCCGTGTGCCGCCGGGAAACGTAGCTCCATCTACCGCGGTGTTACTAGGCATAGATGGACTGGTCGTTATGAAGCGCATCTTTGGGATAAGAGTACATGGAATCAAAATCAGAATAAGAAAGGAAAGCAAGTTTACTTGGGGGCTTATGATGATGAGGAAGCAGCGGCTAGAGCGTATGATCTTGCTGCTCTGAAATATTGGGGTCCTGGGACTCTCATTAATTTTCCTGTGACTGATTATACAAGAGATCTCGAAGAAATGCAGAACGTTTCGAGAGAAGAATACCTTGCGTCTTTGCGTCGGAAGAGCAGTGGGTTTTCAAGAGGATTAGCAAAATATCGTGGACTCTCAAGTCGATGGGATCCATCATATGGCCGAATGACTGGATCGGATTACTTCAGTAGTATGCATTATGGTGCAGGGGATGATTCAGCTGCAGAAAGTGAATACGTTAGTGGTTTCTGCTTAGAAAGAAAGTTTGATTTAACAAATCACATCAAATGGTGGGGATCTAATAAGAATCGACAACCTGATGCTGGAACAAAACATGGTTTTGCTGGAGATATTTACAGTGAACTGAAAACATGGGAACAGAAAGTCCAACCAACAGAACCATACAAGATGCCAGAGTTGGGCCGGCTCCACAATGAGAAAAAGCATAAAAGTTCTTCAATCTCTGCCTTAAGTATATTATCGCAGTCTGCTGCTTACAAGAGCATGCAAGAGAAAGCGGCAAAAAGGCAAGAAAATAGCATTGATAATGATGAGAATGAGAACAAGAATATAGTCAATGAGTTGGGTCGTGGGAAGGCGGTAGAGAAACCCTCAAATCATGATGGTGACAATGATCGGCTTGGCATTGCAATGGGAATGAGTGGGGCGTTGTCTCTTCAAAGAAATGTTTATCCATTGACGCCATTCTTGTCTACACCACTTTTGACAGCCTACAACACTGTTGATCCACTGGTAGATCCTGTTCTCTGGACATCTCTCATTCCTATGCTTCCTGCTGGCCTTTCTCGTACAGCTGAGGTTACAAAGACAGAGACAGATTCTTCAACGTACACTATGTTTCAACCAGAGGAGTAA 1239 0.4431 MASSSSDPGKSAETAEALVAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLAKYRGLSSRWDPSYGRMTGSDYFSSMHYGAGDDSAAESEYVSGFCLERKFDLTNHIKWWGSNKNRQPDAGTKHGFAGDIYSELKTWEQKVQPTEPYKMPELGRLHNEKKHKSSSISALSILSQSAAYKSMQEKAAKRQENSIDNDENENKNIVNELGRGKAVEKPSNHDGDNDRLGIAMGMSGALSLQRNVYPLTPFLSTPLLTAYNTVDPLVDPVLWTSLIPMLPAGLSRTAEVTKTETDSSTYTMFQPEE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04377 412 Gene3D AP2/ERF domain 60 128 IPR036955 GO:0003700|GO:0006355
Vivi6g04377 412 PRINTS Ethylene responsive element binding protein signature 108 128 IPR001471 GO:0003700|GO:0006355
Vivi6g04377 412 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Vivi6g04377 412 ProSiteProfiles AP2/ERF domain profile. 60 126 IPR001471 GO:0003700|GO:0006355
Vivi6g04377 412 Pfam AP2 domain 60 118 IPR001471 GO:0003700|GO:0006355
Vivi6g04377 412 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 291 - -
Vivi6g04377 412 SMART rav1_2 60 132 IPR001471 GO:0003700|GO:0006355
Vivi6g04377 412 Coils Coil 288 315 - -
Vivi6g04377 412 SUPERFAMILY DNA-binding domain 59 127 IPR016177 GO:0003677
Vivi6g04377 412 FunFam AP2-like ethylene-responsive transcription factor 59 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04377 Vivi-Chr6 144142183 144146059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04377 19 395 AP2-EREBP Transcription Factor Family AT2G41710 67.268 1.32e-173 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g04377 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04377 K09285 - gmx:100814117 702.975