Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04376 ATGGCGTCTTCTTCCTCCGATCCCGGAAAGTCCGCGGAGACAGCAGAAGCTCTGGTGGCGGCGAACGATCAGCTTTTACTGTACAGAGGATTGAAGAAAGCGAAGAAAGAGAGAGGCTGTACTGCCAAAGAACGAATCAGTAAAATGCCTCCGTGTGCCGCCGGGAAACGTAGCTCCATCTACCGCGGTGTTACTAGGCATAGATGGACTGGTCGTTATGAAGCGCATCTTTGGGATAAGAGTACATGGAATCAAAATCAGAATAAGAAAGGAAAGCAAGTTTACTTGGGGGCTTATGATGATGAGGAAGCAGCGGCTAGAGCGTATGATCTTGCTGCTCTGAAATATTGGGGTCCTGGGACTCTCATTAATTTTCCTGTGACTGATTATACAAGAGATCTCGAAGAAATGCAGAACGTTTCGAGAGAAGAATACCTTGCGTCTTTGCGTCGGAAGAGCAGTGGGTTTTCAAGAGGATTAGCAAAATATCGTGGACTCTCAAGTCGATGGGATCCATCATATGGCCGAATGACTGGATCGGATTACTTCAGTAGTATGCATTATGGGGATGATTCAGCTGCAGAAAGTGAATACGTTAGTGGTTTCTGCTTAGAAAGAAAGTTTGATTTAACAAATCACATCAAATGGTGGGGATCTAATAAGAATCGACAACCTGATGCTGGAACAAAACATGGTTTTGCTGGAGATATTTACAGTGAACTGAAAACATGGGAACAGAAAGTCCAACCAACAGAACCATACAAGATGCCAGAGTTGGGCCGGCTCCACAATGAGAAAAAGCATAAAAGTTCTTCAATCTCTGCCTTAAGTATATTATCGCAGTCTGCTGCTTACAAGAGCATGCAAGAGAAAGCGGCAAAAAGGCAAGAAAATAGCATTGATAATGATGAGAATGAGAACAAGAATATAGTCAATGAGTTGGGTCGTGGGAAGGCGGTAGAGAAACCCTCAAATCATGATGGTGACAATGATCGGCTTGGCATTGCAATGGGAATGAGTGGGGCGTTGTCTCTTCAAAGAAATGTTTATCCATTGACGCCATTCTTGTCTACACCACTTTTGACAGCCTACAACACTGTTGATCCACTGGTAGATCCTGTTCTCTGGACATCTCTCATTCCTATGCTTCCTGCTGGCCTTTCTCGTACAGCTGAGGTTACAAAGACAGAGACAGATTCTTCAACGTACACTATGTTTCAACCAGAGGAGTAA 1233 0.442 MASSSSDPGKSAETAEALVAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLAKYRGLSSRWDPSYGRMTGSDYFSSMHYGDDSAAESEYVSGFCLERKFDLTNHIKWWGSNKNRQPDAGTKHGFAGDIYSELKTWEQKVQPTEPYKMPELGRLHNEKKHKSSSISALSILSQSAAYKSMQEKAAKRQENSIDNDENENKNIVNELGRGKAVEKPSNHDGDNDRLGIAMGMSGALSLQRNVYPLTPFLSTPLLTAYNTVDPLVDPVLWTSLIPMLPAGLSRTAEVTKTETDSSTYTMFQPEE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04376 410 Gene3D AP2/ERF domain 60 128 IPR036955 GO:0003700|GO:0006355
Vivi6g04376 410 PRINTS Ethylene responsive element binding protein signature 108 128 IPR001471 GO:0003700|GO:0006355
Vivi6g04376 410 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Vivi6g04376 410 ProSiteProfiles AP2/ERF domain profile. 60 126 IPR001471 GO:0003700|GO:0006355
Vivi6g04376 410 Pfam AP2 domain 60 118 IPR001471 GO:0003700|GO:0006355
Vivi6g04376 410 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 289 - -
Vivi6g04376 410 SMART rav1_2 60 132 IPR001471 GO:0003700|GO:0006355
Vivi6g04376 410 Coils Coil 286 313 - -
Vivi6g04376 410 SUPERFAMILY DNA-binding domain 59 127 IPR016177 GO:0003677
Vivi6g04376 410 FunFam AP2-like ethylene-responsive transcription factor 59 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04376 Vivi-Chr6 144142183 144146062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04376 19 393 AP2-EREBP Transcription Factor Family AT2G41710 66.753 2.92e-170 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi6g04376 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04376 K09285 - gmx:100814117 707.983