LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi6g04375	ATGGGAACTGCTTCGCGGCAGTTCAAGATTATGCTCAAAAAGAACTGCCTCCTCAAAATTCGTCATCCTTTCGTTACTGCTACTGAGATTTTGCTCCCTGCGATTGTGTTGCTGCTATTAGCAGCTGTAAGAATGGGAGTGGATACGCAAATTCATCCAGATCAATCGCACATTCAAAAAGATATGTTTGTAGAAGTGGGGAAAGGAATATCCCCTAACTTTCAACAAGTTTTGGAATCCTTATTGGATAAGAGAGAGTATTTAGCTTTTGCACCAGACACCGATGAGACAAGGATGATGATAGACGTGCTGTCGATCAAATTTCCAATTTTGAAGCTTGTGAGTATTGTATACAAAGATGAGTTAGAGTTGGAGACGTACATCCGGTCTGATGCTTATGGTATCTGCAAAGACGTTAGGAATTGTTCAAATCCCAAAATTAAAGGAGCAGTTGTATTTTACGAACAAGGTCCTCAGTCATTTGATTATAGCATACGCCTCAATCATACATGGGCTTTCTCCGGTTTTCCGGATATTACAACAATAATGGATACAAATGGCCCTTTTCTCAATGACTTGGAACTTGAAGTTAGTGCTGTACCAACAATGCAATACAGCTTCAGTGGGTTTTTGACACTCCAGCAAGTGGTTGATTCGTATATATTATTTATAGCTCAACAACCTGAATTAAACTCAAATGCCGAAACTGTAAAGCTTCCTCTTTTAGGATTTAATGACACTGATTTCTCGCTAAAAGTTCCATGGACTCAGTTTAACCCTACTAACATACGAATAGCTCCATTTCCCACTCGAGAGTACACTGATGACCAATTCCAAGCAATAGTAAAGAAAGTCATGGGAATATTGTATTTATTGGGGTTTCTCTATCCAGTTTCTCGCCTGATAAGTTATTCTGTGTTTGAAAAGGAACAAAAGATCAAAGAAGCACTCTATATGATGGGCTTAAAAGATGGCATTTTTCATCTCTCTTGGTTTGTCACGTATGCTTTGCAGTTTGCAATTTCTTCTGCGGTCATTACAGCTTGTACCATGGATAATATATTCAAATATAGTGATAAGACACTGGTGTTTGCATACTTCTTCATTTTTGGGCTTAGTGCAATCATGCTGTCTTTTTTGATATCCACCTTTTTCAAAAGGGCCAAAACAGCTGTAGCTGTTGGAACTCTGTCATTTCTTGGTGCCTTTTTCCCTTATTACACTGTCAACGATGAGGGAGTCTCTATGATCTTGAAGGTTCTTGCTTCTCTACTTTCACCTACGGCATTTGCTCTGGGTTCTGTCAACTTTGCTGATTATGAGCGTGCTCATGTTGGGCTTCGTTGGAGCAACATATGGCGAGAGTCCTCTGGAGTGAACTTTTTAGCTTGTCTTCTAATGATGATACTTGATACACTGCTCTATTGTGCAATTGGACTGTATTTTGATAAGGTTCTTCCAAGGGAGCATGGAATGCAATATCCATGGAACTTTATTTTCAAAAAAGACTTTGGGAGAAAGAAAAAAATTGAAGAAAATTGTTCCTCCAGTTTTAAAGTTAAAGTTACTGGTAATAGTTCTGAGCCAGAAAGGAATCTTTTTGGGCAAGATACTACCAATCCTGCTATAGAAGCAATAAGCTTAGACATGAAACAACAGGAGCTTGATGGAAGGTGCATTCAAATCAGGAATTTGCATAAAGTGTATGATACTAAAAAAGGAGATTGCTGTGCTGTTAATTCATTGCAACTGACATTATATGAAAATCAGATTCTTGCTCTTCTAGGACATAATGGAGCTGGGAAAAGCACGACAATATCAATGCTTGTTGGTCTTCTTCCTCCTACTTCTGGGGATGCTTTGATTTTTGGAAAGAATATTGTCTCTGATATTGATGAGATACGGAAGGTTTTGGGTGTTTGTCCACAACATGATATACTCTTTCCTGAATTGACTGTGAGAGAGCATTTAGAACTATTTGCTATATTAAAGGGTGTGGAGGAAGACACTCTGGAGAATGTTATTATTAATATGGCCGATGAGGTGGGCCTGGCAGATAAAATCAACACTGTTGTGAGTTCTCTTTCTGGTGGCATGAAGAGGAAATTGTCTCTTGGAATCGCATTAGTTGGAAACAGTAAGGTTATAATTCTTGACGAGCCTACAAGTGGAATGGATCCATATTCGATGCGATTGACTTGGCAGTTAATAAAAAAAATTAAGAAGGGCAGAATAATTTTGCTTACAACACATTCCATGGACGAAGCAGATGAACTAGGTGACCGGATAGCTATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGCTCCCTTTTCTTGAAGCATCATTATGGAGTTGGTTACACTTTAACTCTTGTAAAGTCTGCTCCTACTGCTTCTATAGCTGGTGATATTGTATACCGATATATTCCAACAGCAACCTGTATAAGTGAGGTTGGAACTGAGATTTCCTTCAGACTCCCTATGGCATCCTCCTCAACCTTTGAGAGGATGTTCAGGGAAATTGAAGGTTGCATGAAAAAACCACTTTTAAGCATGGAAATAAGTGACAGTTGTGAAAAAGACAGTCATGGTATTGAAAGTTATGGTATATCTGTAACAACCCTGGAGGAGGTATTCTTGAGAGTTGCTGGATGTGACTATGATGAAGTTGAATGCTCTGAAGAAACTAACCGCTCCCTTATATCAGAACCTGTAGTTTCTCTTGCTTCTGATGATTGTCCATCCACAAAAATATGTTATTATAAAGTTTTTGGAAATTATAAGAAGGTTATTGGCTTCATGTCTACGATGGTGGGGAGAGCTTGTGATTTAATATTTGCTGCAGTTATTAGTTTTATCAACTTCATTGGCATGCAGTGTTGTAGCTGCTGTCTCATTACTAGGTCCACTTTTTGGCAGCATTCTAAAGCTTTATTTATTAAGAGGGCAATATCTGCTCGCAGAGATCACAAAACAATTATGTTTCAACTAATAATTCCTGCTATCTTCTTGTTTATTGGTCTTTTATTTATGGAGCTCAAGCCACATCCTGATCAGATTTCACTGACTCTTTCAACATCTAATTTTAATCCTCTATTGAGCGGTGGGGGTGGGGGTGGTCCAATTCCGTTTAACCTATCTTTTCCAATTGCAGAAAAGGTAGCACAAAATGTCAAAGGAGGTTGGATTCAAAGTTGCAACCCAAGCTCATACAAATTCCCCAATTCAGAAAAGGCATTAACTGATGCAATGGAAGCAGCAGGGCCAACTTTGGGACCTGCTCTACTTTCAATGAGTGAATATTTAATGTCTAGCTTTAATGAATCCTACCAATCTAGGTATGGGGCAATTGTGATGGATGATCAAAACACTGATGGAAGCTTAGGCTACACCGTATTACACAACTTTTCTTGTCAGCATGCTGCTCCCACCTTTATCAATTTGATGAATTCTGCAATTCTTAGGCTTGCTACTCATGACATGAATGCCACAATTCAGACACGCAACTACCCTCTACCAATGACACAAAGCCAGCACTTACAACGTCATGACCTGGATGCTTTCTCTGCTGCCATCATTGTCAACATAGCCTTCTCTTTCATTCCTGCTTCATTTGCTGTTTCAATTGTTAAGGAACGAGAAGTGAAAGCTAAGCATCAACAACTAATCAGTGGGGTTTCAGTCCTTTCATATTGGGTGTCTATATTTATTTGGGACTTCGTGAGCTTCTTGTTTCCGGCCTCTTTTGCCATAGTTCTCTTTTACATCTTTGGTCTGGATCAGTTTGTTGGGGGAGTTTCTTTGGTACCAACTATCATCATGCTTTTGGAATATGGACTTTCAATTGCTTCGTCAACTTATTGCCTTACATTTTTCTTTTTTGACCACACTGTGGCCCAGAACGTGGTTCTCCTGGTCCACTTTTTTTCGGGATTGATACTAATGGTTATCTCATTCGTTATGGGACTCTTCCCATCCACAATAAGCGCCAATTCTTTTCTTAAGAACTTTTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGACTTGCTTCATTAGCTCTTCTGCGGCAAGGAATGAAAGATAAAACAAGCGATGGAGTGTATGACTGGAATGTTACGGGTGCCTCCATTTGTTATCTTGCTGTTGAGAGCGTTGTCTATTTTTTATTGACACTCGGGCTTGAAATTTTTCCTTCTCTCAAATTGACTCCGTTCATGATCAAAAAGTGGTGGGGGAAAATTAATATATTCCCACATAATTCTACTTATCTGGAACCTTTATTAGAACCTGCTGAAACTTTTGTTACGGACCTCAACGAAGACGTGGATGTGAAAACAGAAAGAAATAGAGTACTCTCAGGCTCCATTGATAATGCCATTATCTACTTGCGCAATCTTCGCAAGGTGTATTCTGAGGAGAAGAAACATGGGAAAAAGGTTGCAGTAGATTCATTAACCTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTTTTAGGAACAAATGGAGCTGGAAAAACCACAACACTTTCTATGTTATGCGGGGAAGAATCTCCTTCTGACGGGACTGCTTTTATTTTTGGCAAAGATATATGTTCCCATCCCAAGGCTGCTCGTAAACATATTGGGTATTGTCCACAATTTGATGCTCTGTTGGAATTCTTAACTGTAAAAGAGCATCTTGAGCTCTATGCTAGAATAAAAAGTGTTCCAGACTACACAATAGACAATGAAGTTTATTCTTGTATCCGATTTCTTCACCAAAAAACCAATAGCTGGATGGTCATAATCAAATGTACATGA	4806	0.3908	MGTASRQFKIMLKKNCLLKIRHPFVTATEILLPAIVLLLLAAVRMGVDTQIHPDQSHIQKDMFVEVGKGISPNFQQVLESLLDKREYLAFAPDTDETRMMIDVLSIKFPILKLVSIVYKDELELETYIRSDAYGICKDVRNCSNPKIKGAVVFYEQGPQSFDYSIRLNHTWAFSGFPDITTIMDTNGPFLNDLELEVSAVPTMQYSFSGFLTLQQVVDSYILFIAQQPELNSNAETVKLPLLGFNDTDFSLKVPWTQFNPTNIRIAPFPTREYTDDQFQAIVKKVMGILYLLGFLYPVSRLISYSVFEKEQKIKEALYMMGLKDGIFHLSWFVTYALQFAISSAVITACTMDNIFKYSDKTLVFAYFFIFGLSAIMLSFLISTFFKRAKTAVAVGTLSFLGAFFPYYTVNDEGVSMILKVLASLLSPTAFALGSVNFADYERAHVGLRWSNIWRESSGVNFLACLLMMILDTLLYCAIGLYFDKVLPREHGMQYPWNFIFKKDFGRKKKIEENCSSSFKVKVTGNSSEPERNLFGQDTTNPAIEAISLDMKQQELDGRCIQIRNLHKVYDTKKGDCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALIFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFAILKGVEEDTLENVIINMADEVGLADKINTVVSSLSGGMKRKLSLGIALVGNSKVIILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASIAGDIVYRYIPTATCISEVGTEISFRLPMASSSTFERMFREIEGCMKKPLLSMEISDSCEKDSHGIESYGISVTTLEEVFLRVAGCDYDEVECSEETNRSLISEPVVSLASDDCPSTKICYYKVFGNYKKVIGFMSTMVGRACDLIFAAVISFINFIGMQCCSCCLITRSTFWQHSKALFIKRAISARRDHKTIMFQLIIPAIFLFIGLLFMELKPHPDQISLTLSTSNFNPLLSGGGGGGPIPFNLSFPIAEKVAQNVKGGWIQSCNPSSYKFPNSEKALTDAMEAAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQNTDGSLGYTVLHNFSCQHAAPTFINLMNSAILRLATHDMNATIQTRNYPLPMTQSQHLQRHDLDAFSAAIIVNIAFSFIPASFAVSIVKEREVKAKHQQLISGVSVLSYWVSIFIWDFVSFLFPASFAIVLFYIFGLDQFVGGVSLVPTIIMLLEYGLSIASSTYCLTFFFFDHTVAQNVVLLVHFFSGLILMVISFVMGLFPSTISANSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVYDWNVTGASICYLAVESVVYFLLTLGLEIFPSLKLTPFMIKKWWGKINIFPHNSTYLEPLLEPAETFVTDLNEDVDVKTERNRVLSGSIDNAIIYLRNLRKVYSEEKKHGKKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAARKHIGYCPQFDALLEFLTVKEHLELYARIKSVPDYTIDNEVYSCIRFLHQKTNSWMVIIKCT	1601

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi6g04375	1601	Gene3D	-	1455	1594	IPR027417	-
	Vivi6g04375	1601	Gene3D	-	547	796	IPR027417	-
	Vivi6g04375	1601	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	560	793	IPR003439	GO:0005524
	Vivi6g04375	1601	ProSitePatterns	ABC transporters family signature.	695	709	IPR017871	GO:0005524\|GO:0016887
	Vivi6g04375	1601	FunFam	ATP-binding cassette sub-family A member 12	552	797	-	-
	Vivi6g04375	1601	PANTHER	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	987	1399	IPR026082	GO:0016020\|GO:0055085\|GO:0140359
	Vivi6g04375	1601	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	1462	1589	IPR027417	-
	Vivi6g04375	1601	Pfam	ABC-2 family transporter protein	992	1394	IPR013525	GO:0016020\|GO:0140359
	Vivi6g04375	1601	Pfam	ABC-2 family transporter protein	237	481	IPR013525	GO:0016020\|GO:0140359
	Vivi6g04375	1601	CDD	ABC_subfamily_A	560	781	-	-
	Vivi6g04375	1601	Pfam	ABC transporter	1485	1575	IPR003439	GO:0005524
	Vivi6g04375	1601	SMART	AAA_5	588	770	IPR003593	GO:0016887
	Vivi6g04375	1601	Pfam	ABC transporter	580	723	IPR003439	GO:0005524
	Vivi6g04375	1601	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	557	798	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi6g04375	Vivi-Chr6	144105485	144134013	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi6g04375	560	796	Calmodulin-binding Proteins	AT2G36910	25.203	2.05e-16	83.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi6g04375	K05643		-	gmx:100803263	2721.42