Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04372 ATGGAAGGAGGGTTATTGGAATATGGAAGAAAGTGCACTCCATCACCTTTCTTGTTGAAGACATACATGTTGGTGGAGGATCCGGGGACCGACGAGGTAATATCGTGGAACGACGATGGAACGGCGTTCGTGGTGTGGCAACCGGCGGAGTTTGCTCGTGATCTTCTTCCAACACTCTTCAAGCATAGCAATTTCTCTAGCTTTGTACGACAACTCAATACTTATGGGTTTCGCAAAGTTGCAACAAGTAGATGGGAATTTTGCAATGAAAAATTCAAGAAAGGTGAAAGAGAGTTACTATATGAGATTCGGCGAAGAAAAGCTTGGAGCAACAAGCAACAACGTTCGGTTCAAAATCAAGATTCTGATGAAGATCAAAGGTCATCATCAACCTCTTCAACTTCTGGTTACACTAATCTTGTGGATGAAAACAAGCGACTCAAGAAGGAAAATGTGGTGTTGAATTCTGAGTTAACAAGCATGAAAAGGAAGTGTAAGGAGCTACTTGATTTGGTATCAGTTTATAATGAAAAACAGGAAGAGGAAAAAGGTAAAGATGATGATGAAAGGCCAATGTTGTTTGGAGTGAGATTGGATGTTCATCAAGGAGAGAGAAAGATGAAAAGGAATAGAGGTGAAATTAGTGAAAATGCAAGTATTTTGTTGTCGCAATCATGCAAATAG 684 0.402 MEGGLLEYGRKCTPSPFLLKTYMLVEDPGTDEVISWNDDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNEKFKKGERELLYEIRRRKAWSNKQQRSVQNQDSDEDQRSSSTSSTSGYTNLVDENKRLKKENVVLNSELTSMKRKCKELLDLVSVYNEKQEEEKGKDDDERPMLFGVRLDVHQGERKMKRNRGEISENASILLSQSCK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04372 227 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi6g04372 227 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi6g04372 227 MobiDBLite consensus disorder prediction 112 141 - -
Vivi6g04372 227 SUPERFAMILY "Winged helix" DNA-binding domain 14 106 IPR036390 -
Vivi6g04372 227 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi6g04372 227 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi6g04372 227 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi6g04372 227 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 172 IPR027725 -
Vivi6g04372 227 Gene3D - 9 107 IPR036388 -
Vivi6g04372 227 Coils Coil 137 164 - -
Vivi6g04372 227 FunFam Heat stress transcription factor B-4 9 107 - -
Vivi6g04372 227 MobiDBLite consensus disorder prediction 204 227 - -
Vivi6g04372 227 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04372 Vivi-Chr6 144094079 144095804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04372 14 175 HSF AT2G41690 60.556 3.08e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi6g04372 HSF_DNA-bind 1.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04372 K09419 - gmx:100802739 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04372 6 144094079 144095804 Vivi6g04372 6 144094079 144095804 ECH