Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04352 ATGGCGGTAATGAAAGAGGTTGAAGACAAAGCTTCTTTTCTTGGAATTGATTTATTGACTGTAGATCTTGATTCCATTCACCTCCCTCCCGGTGAAGACTGTGGCACGATCAGTGACGATGAACAAGTTCTTCAAGAGGAGAATCTTGAGTCTGATACTGGTTTTGGCAACATTATAGTAGTGGATAATACCCCGGTTGTTACCAAAGAGAAATTTGCGAAGCTTGAAGGTGTTCTTAGAAAAGTTTTCAGTAAGGTTTGTGCTATTAAGGATGATGGCTTCTGGATGCCTGTGGATCCTGTGACTGAAAAGACCGTCGGTTACTGCTTCGTTGAGTACAATACTCCTCAGGAAGCCGAGCTTGCTAAAGAGAATGCCCAAGGACACAAACTAGATCGTTCTCACACATTTATCGTTAATATGTTTGATGATTTTGACCGTTTTATGAGAGTGCCAGATGAATGGGCTCCTCCTCCTAACAAGGAATATGCTCCAGGGGAAAATCTTCAACAATGGCTTACTGATGCTAAGGCCCGAGACCAGTTTGTGATTCACGCCAGTTCAGATACCGAGGTTTTGTGGAATGATGCTAGGCATTTAAAGCCTGATTCTGTATATAAACGTGCATTTTGGACTGAGAGTTTTGTACAATGGTCTCCTCTGGGCACATACTTGGCAACAGTTCACCGCCAGGGGGCAGCAGTATGGGGAGGTGCTACAACCTTCAATTGTCTTAAGCGTTATGCTCATTCCCAGGTGAAGCTAATTGATTTTTCACCTGGTGAGAAGTATTTGGCAACTTATAGCAGCCATGAACCAAGCAATCCCCTGGATGCTAATAGGATTGTGATAAATATATTTGATGTGAGAACTGGTAAAGTGATGAGAGGTTTTAAGGGAACTGTGGATGATTTTGCTATCGGAGGTACCAGGGGTGTCAGTGGAGTGTCTTGGCCTGTTTTCAAATGGAGTGGTGGAAGAGAAGATAAGTACTTTGCAAGGATGGGGAAGAATATTCTCTCTGTATACGAGACAGAAACATTTTCTCTCATTGGCAAAAAGTCCTTGAAGGTTGAAAATATAACAGATTTCAGCTGGTCACCAACTGATCCAATCATTTCACTGTTTGTTCCTGAGACGGGAGGTGGGAACCAGCCTGCTAGGGTATGTCTTGTTTCTATCCCCAGCAAAGAAGAACTCAAACAAAAAAAACTACTTAGTGTCGGTGACTGCAAGATGTATTGGCAGAGCAATGGGGATTACCTTGCTGTTAATGTGGACCGATATACCAAGACAAAGAAAAGTACTTACACTGGCTTTGAGCTTTTCCGCATTAAGGAACGTGACATACCCATTGAAGTTCTAGAGCTTGAGAATAAGAATGATAAGGTCATTGCATTTGCTTGGGAGCCAAAGGGACATAGGTTTGCAGTTATTCATGGCGACAACCCTAAGCCCGATATTAGTATCTATTCTATGCGAACTGCTCAGAACACTGACCGTGTTTCAAAGCTCACTACTTTAAAAGGAAAGCAGGCAAATGCTTTATTTTGGTCTCCTGCAGGCCGTTTCATTGTATTTGCAGGGTTGAGAGGCTTCAGTGGGCCGTTGGAATTTTACAATGTCGATGAGCTTGAAATCATGGCCAGTACTAGTGATCATTTAATGGCAACCGACGTTGAATGGGATCCATCTGGAAGGTATGTTGCAACTGCTGTGAGTTCAGTTGATGAAATGGAAAATGGATTCAATATATGGTCTTTCACTGGCAAACATCTTTATAGGATATTGAAGGATCACTTGTTTCAGTTCTTATGGAGACCAAGGCCACCATCCTTCTTGACTCCGGAGAAAGAGGAAGAGATTGCAAAGAACTTGAAGAAGTATAGTAAGAAATATGAAGCAGAAGATCAAGATATTTCGTTGCTGCTGATTGAGCAGGAGCGTGAGAGGCGGAGTGTCTTGAAAGAAGATTGGGACAAGTGGGGGAATGAGTGGAAGGTGCTGCACGAAGAAGAGAAGTTAGAGAGGATGATTCTGAGGGACGGAGAAGCTAGTGACGAGGAAGAGGACATTGAAGTTGAGGAGGTAGTCTATGTTACCAATAGATCCTTCACTTTCTCTGGTGCTCTGTGA 2136 0.4298 MAVMKEVEDKASFLGIDLLTVDLDSIHLPPGEDCGTISDDEQVLQEENLESDTGFGNIIVVDNTPVVTKEKFAKLEGVLRKVFSKVCAIKDDGFWMPVDPVTEKTVGYCFVEYNTPQEAELAKENAQGHKLDRSHTFIVNMFDDFDRFMRVPDEWAPPPNKEYAPGENLQQWLTDAKARDQFVIHASSDTEVLWNDARHLKPDSVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNCLKRYAHSQVKLIDFSPGEKYLATYSSHEPSNPLDANRIVINIFDVRTGKVMRGFKGTVDDFAIGGTRGVSGVSWPVFKWSGGREDKYFARMGKNILSVYETETFSLIGKKSLKVENITDFSWSPTDPIISLFVPETGGGNQPARVCLVSIPSKEELKQKKLLSVGDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKVIAFAWEPKGHRFAVIHGDNPKPDISIYSMRTAQNTDRVSKLTTLKGKQANALFWSPAGRFIVFAGLRGFSGPLEFYNVDELEIMASTSDHLMATDVEWDPSGRYVATAVSSVDEMENGFNIWSFTGKHLYRILKDHLFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDISLLLIEQERERRSVLKEDWDKWGNEWKVLHEEEKLERMILRDGEASDEEEDIEVEEVVYVTNRSFTFSGAL 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04352 711 Gene3D - 52 151 IPR012677 -
Vivi6g04352 711 Gene3D - 172 425 IPR015943 GO:0005515
Vivi6g04352 711 PIRSF Transl_init_eIF3b 3 707 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vivi6g04352 711 Gene3D - 429 600 IPR011042 -
Vivi6g04352 711 FunFam Eukaryotic translation initiation factor 3 subunit B 408 624 - -
Vivi6g04352 711 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 132 IPR000504 GO:0003723
Vivi6g04352 711 FunFam Eukaryotic translation initiation factor 3 subunit B 52 151 - -
Vivi6g04352 711 FunFam Eukaryotic translation initiation factor 3 subunit B 178 379 - -
Vivi6g04352 711 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 45 700 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vivi6g04352 711 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 36 698 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vivi6g04352 711 SUPERFAMILY RNA-binding domain, RBD 76 135 IPR035979 GO:0003676
Vivi6g04352 711 SUPERFAMILY DPP6 N-terminal domain-like 215 598 - -
Vivi6g04352 711 CDD RRM_eIF3B 56 140 IPR034363 -
Vivi6g04352 711 Pfam Eukaryotic translation initiation factor eIF2A 403 604 IPR013979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04352 Vivi-Chr6 143817659 143820739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04352 6 701 Eukaryotic Initiation Factors Gene Family AT5G27640 70.085 0.0 1050