Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04345 ATGAAAATAAGACTTTTTCTATCACCACCACAAAACCTCCGACTCAGATACAAACGCAAGATCTGCCCTTTCCTGATTACCATGGCAGAATCATTTCTCTTCGATGTTGCCAATTCACTACTTGGGAAGGTTGCTTCTTTTGCTTGTCAAGAAGCTTCTCTGGCCTATGGTGCGAAAGACGATCTAGAACGTTTCAGAGAATCTTTGTTAATTGTCAGAGGTTATCTACTGGATGCTGAGTCCAGGAAAGACCAAAGTCACGCTTTACGTGAATGGCTGAGGCAGATCCAAAACATTTGTTTTGATGCTGAAGATATATTTGATAAATTTGAGCTGCAAGACAAGAGGAAGCAAATTGTCAAATCCTCTGGAAGCATCACAAACAAGGTAAGCCACTTGTTTTCTACAGATAATTCAATTGTATTCCGTCTTCGGATGGGACATCAAATCAAAGAGATTAGTCAAAAATTGTTTAAGAAAGCAGCTGAAGGGAAAACGTATGGACTTACAACTATTCCCGAACTTGTTGTGCAAGAAAGAGAACTCACTTATCCTGACGTTAATGTTTCACGTGTAATCGGAAGGGATAATGATAAAGATGAAATTTTCAAGCTTTTGAAGCAACCTTTTCCTCAGGATGGAAATGATGGTGATAAAAGCATGTGTGTCATTCCCATTGTGGGAATGGGAGGATTAGGGAAGACCACTCTTGCAAAGTTGGTGTTCAATGATGACACAGTGGATCAGCTTTTCCAATTGAAGATGTGGGTATGTGTCTCTCTTAATTTTGACATCAAGCAGATAATCATTAATATCATCAACTCTGCCAGTACTGCAGATTCTAAAGCAGCTTCAGCTCCATTGCCCCGTCTCGCTCCTCAAGAGAACATTGACAGCTTAGACATTGTGCAGCTAGTAAGTCGTTTGAAACAAAAACTTTCTGGTCAAAAGTTTTTACTTGTGTTAGATGACATATGGAACGAAGATCGTCAAAAGTGGATTGAGTTGGAAGATTTGATCAAAGTTGGCGCACCAGGAAGTAAAATTATGGTCACAACACGTAGTACATCAATTGCTTCTATGATGGGTAATGTTTCCTCATATGAATTAAAAGGTCTTTCTTCAGAGGAATGTTTATCTCTATTTGTCAAATGTGCATTCAAGGAAGGTGAAGAAAAAAGATATCTGAATCTAGTGGAGATCGCAAAAGAAATTGTGAAAAAATGTCACGGGGTTCCACTAGCTGTTAAAACATTAGGAAGTTCTCTTTTCTCAAACTTTGATATAAATAAGTGGGAATTTATTAGAGACTCTGAGATATGGAATTTAGAACAAAAAAAGGATGGTATTTTACCTGCCCTTAAAGCAAGTTACGATCAAATGCCATCCATTCTAAAACAATGTTTTGTTTATTTTTCCCTTTATCCCAAAGATTATATCTTTAATAGTCTTGTAATGTGTGATCTTTGGGTAGCCCTTGGATTAGTTCAATCCCGAAATGGAAGAGAAAAGCTAGAGCATGTTGCACGAAAATATATTGATGAGTTACATTCAAGATCATTTATTCAGGTTGTCGATGACTTTGACTTCTTTTGCGAGTTCAAAGTACATCATTTGATACAAGATCTTGCATTGTATGTTGCAGGAGACGAGTTTGTGGCGGTAAACTCACAAACTCGACATATACCTCAACAAGCAAGGCATTTATCATTTGTTGTTGAAGATAAGTCATTTGGCCATGCTTTGTTTCCAGAGTCTAGAAGTGTGAGAAGCATACAATTTCCCATCTCAGGAATGGGTCTTGAGAGTGAAAGTGTTCTGAATACATGGCTGTCAAAGTACAAATACTTGCGTTATTTACATTTAACTGACTCTTCTTTTGAAACTGTGCCCAAATCAATTGCAAAATTAGAGCACCTGCGTTGTCTCGATCTTGCTAATAATCACAAAATCAGAACACTACCAAATTCAATTTGTGAACTTCTAAATTTGCAAGAATTGTCGTTTAATGGATGCACAAAGCTTGAAAAGTTGCCCAAAGGATTAGGAAAGTTGACTAGCCTCCGAATTCTGAGTGTTACTACAAAACAATCTACTCTACCATATTATGAATTCGCTAGCTTGAACAATCTTCAAACTTTGGTTTTTCAGGATTGTGTCAATCTAAAGTTTTTGTTCGAACAACCACTCCCTTTTGTTGAAAAACTGTATTGCATATTATGTGATAGCCTGGAGCGCTTACCTCTCATTACTTTTCCTAAATTACAGACGTTGGTTATTGATGGTTGTCAGATGTTAAACTTGTCATTGGAGAATGAAAGCTCAATCCAGAAGCTGACGATGAAACATTTGTATCTCTCTGGTTTTCCAAAGCTTCTAACACTACCTCGATGGATTGTATGTGCTGTGGACACTTTAGAGATCTTTTATATTGATAATTTTCCTAATCTTCAAATGCTTCCCGAGTATCTTACTACAATGACTCGTCTTAAGAGGCTCTCTATTGTTAGCTGTTCTCAATTGTTGAGTCTTCCAACAAGTGGTTGGGATCGCCTCACTGCACTTGAATATTTAACCATATTTGATTGTCCTGAATTGTACCGAAAATGTCAGCCTCATTCTGGTGAGTACTGGCCCATGATCTGTCATATGAAAAACATTGACATTCGAGAATTGAAAAAGGAGGAGGAGGAGGAGGAATAA 2703 0.3759 MKIRLFLSPPQNLRLRYKRKICPFLITMAESFLFDVANSLLGKVASFACQEASLAYGAKDDLERFRESLLIVRGYLLDAESRKDQSHALREWLRQIQNICFDAEDIFDKFELQDKRKQIVKSSGSITNKVSHLFSTDNSIVFRLRMGHQIKEISQKLFKKAAEGKTYGLTTIPELVVQERELTYPDVNVSRVIGRDNDKDEIFKLLKQPFPQDGNDGDKSMCVIPIVGMGGLGKTTLAKLVFNDDTVDQLFQLKMWVCVSLNFDIKQIIINIINSASTADSKAASAPLPRLAPQENIDSLDIVQLVSRLKQKLSGQKFLLVLDDIWNEDRQKWIELEDLIKVGAPGSKIMVTTRSTSIASMMGNVSSYELKGLSSEECLSLFVKCAFKEGEEKRYLNLVEIAKEIVKKCHGVPLAVKTLGSSLFSNFDINKWEFIRDSEIWNLEQKKDGILPALKASYDQMPSILKQCFVYFSLYPKDYIFNSLVMCDLWVALGLVQSRNGREKLEHVARKYIDELHSRSFIQVVDDFDFFCEFKVHHLIQDLALYVAGDEFVAVNSQTRHIPQQARHLSFVVEDKSFGHALFPESRSVRSIQFPISGMGLESESVLNTWLSKYKYLRYLHLTDSSFETVPKSIAKLEHLRCLDLANNHKIRTLPNSICELLNLQELSFNGCTKLEKLPKGLGKLTSLRILSVTTKQSTLPYYEFASLNNLQTLVFQDCVNLKFLFEQPLPFVEKLYCILCDSLERLPLITFPKLQTLVIDGCQMLNLSLENESSIQKLTMKHLYLSGFPKLLTLPRWIVCAVDTLEIFYIDNFPNLQMLPEYLTTMTRLKRLSIVSCSQLLSLPTSGWDRLTALEYLTIFDCPELYRKCQPHSGEYWPMICHMKNIDIRELKKEEEEEE 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04345 900 SUPERFAMILY L domain-like 526 879 - -
Vivi6g04345 900 Gene3D Ribonuclease Inhibitor 558 894 IPR032675 -
Vivi6g04345 900 PANTHER DISEASE RESISTANCE PROTEIN RP 84 863 IPR044974 GO:0006952
Vivi6g04345 900 Gene3D - 37 151 - -
Vivi6g04345 900 Pfam Rx N-terminal domain 38 124 IPR041118 -
Vivi6g04345 900 Gene3D - 457 545 IPR036388 -
Vivi6g04345 900 PRINTS Disease resistance protein signature 223 238 - -
Vivi6g04345 900 PRINTS Disease resistance protein signature 635 651 - -
Vivi6g04345 900 PRINTS Disease resistance protein signature 409 423 - -
Vivi6g04345 900 PRINTS Disease resistance protein signature 312 326 - -
Vivi6g04345 900 CDD RX-CC_like 29 153 IPR038005 -
Vivi6g04345 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 471 IPR027417 -
Vivi6g04345 900 Gene3D - 179 367 IPR027417 -
Vivi6g04345 900 Gene3D - 372 456 IPR042197 -
Vivi6g04345 900 Pfam NB-ARC domain 218 467 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04345 Vivi-Chr6 143776252 143780013 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04345 224 866 WRKY Transcription Factor Family AT5G45050 23.270 1.34e-18 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04345 - - vvo:131611027 1256.51