Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04338 ATGGATCACAGAACGAAACCTAACGATTCGCTCTCTTACTCCACTCTCTTCAATCTCCAGTCTTTGATCAACTTTGAACTTCCAGAACAAGATGATGATTTTGAATATTATGGGAATAGTAGTCAGGATGAGAGCAGAAACAGCCGAGGTGGGGCAGTTGCAAGTCATAGTAATGGGAATGTGAATTTGTTGAAGAAGAGGAGTCGGTCTGGGAACAGTGATAACGAGGAGAAAAGTGGTTTTCACGGGACACATACGATGGAAGAACGATACCGATCAATGCTTGGAGACCATATTAAGAAATACCAGAGGAGGTTTAAGGGTACCACGGCTAGTCCGGACACGAATCAGGTTGCTGTTCCGTTTGTAAAGGCTAACAATGGATTAAAAGCTCCCAAGCTGGGGAATGAACGTAGAAGAGGATTGCTTGATGAAGAGACTATGTCTGAATGGATGAATGGTTCAAATGCTCAGAAACCGGGGAACCTCCTTGATACGGATTTTGTCCGGCAACATGGCCCTGAGAGGGTTATGTATGAACCTGCATTTGTGAATATAGGGGACGGTGTGACTTATAAGATTCCTCCAGTTTATGATAAGTTGGCAGCAATGGTGAACCTTCCAAGCTTCTCAGATATCCATGTTGAGGACTTCTACCTTAAGGGTACATTGGATTTAGGCTCCTTGGCTGAAATGATGGCATCTGATAAAAAGTTTGGGAATAGAAACCGAGCAGGCATGGGGGAAACTGTATCCCAATATGAATCACTTCAAGCACGTCTAAAGGACACACCAGTTTCTAATTCAGCTCACAAGTTCAGTCTGAAACTATCTGATGCTGATTTGAATTCCTCCATTCCAGAGGGGGCAGCAGGAAGCATAAAGCGGTCTATTTTATCTGAGGGGGGTATATTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGAGACACTTATGAGATCATTGAAAGAAGCTTACCCAAGAAACAAAAGGTAAAGAAAGACCCTGCGTTAATAGAGAAAGAGGAAATGGATAAGTTTGGAAAGATTTGGGTAAATATTGTTAGAAGAGACCTACCAAGGCATCATAGGAATTTTACCTCTTTCCATCGAAAGCAGCTCATTGATGCTAAGAGGGCCTCAGAGAACTGTCAAAGAGAGGTTAAAATGAAAGTTAGTAGATCGCTTAAATGGACGAGAACTGCTAGCATGCGCTCCCGAAAACTAGCTAGAGACATGTTACTATTCTGGAAGCGAATAGATAAGGAGATGTTAGAAGTGAGGAAAAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGACGCGAGCAGGAGATTCGAGAAGCCAAGAGGCAGCAGCAAAGGCTAAATTTTCTAATACAACAGACTGAGCTATACAGTCACTTTATGCAGAACAAGTCAATATCTTCAGAAGCTCTACCCATGGCAGATGAAAATACAAATGATGAAAATGCACTGATCAACTCTTCAGCTGCTGGTGGTAACGCGGAGGAAGATCCCGAAGAGGCTGAATTGAGGAAGGAAGCTTTGAAAGCTGCTCAAGAAGCAGTTTCTAAGCAGAAAATGTTAACAAATGCTTTTGACAGTGAATGCTTGAGACTGCGCCAGACTGGTGAATCTGATTCACTTCAATCAGAAGTTTCTGGAGCAAGTAATATTGACTTGAAAACCCCCTCCACCATGCCCGTGGCATCGACAGTTCGGACACCTGAATTATTTAATGGCTGTCTGAAAGATTATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTACGAGCAGGGTTTAAATGGTATTCTTGCTGATGAGATGGGACTTGGAAAGACCATTCAGGCTATGGTTTTTTTAGCTCATTTAGCTGAGGAGAAAAACATATGGGGACCCTTTTTGGTTGTTGCACCTGCTTCTGTATTAAACAATTGGAATGAGGAACTCGAGCGCTTCTGCCCTGAACTGAAAGTACTTCCTTATTGGGGTGGGCTTTCAGAGCGGACAGTGCTTAGGAAAAGTATGAACCCAAAGGATCTTTATCGCAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTGTTAGTCTCTGATGAGAAGTATTTCCGGCGCGTGAAATGGCAGTATATGGTTTTAGATGAAGCTCAGGCAATTAAAAGTTCCAACAGTATAAGATGGAAGACACTCCTCAGCTTTAACTGTCGGAATCGCCTACTGCTGACCGGTACGCCCGTTCAGAATAATATGGCCGAGTTGTGGGCTCTTCTTCACTTCATTATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTAAACGAGCACCAACTTAATCGATTGCATTCAATTATAAAGCCTTTCATGCTTCGGCGTGTTAAGAAAGATGTAGTTTCTGAGCTGACTAGCAAAACTGAAGTTACTGTGCACTGCAAGTTAAGTTCTAGGCAACAAGCTTTCTATCAGGCAATTAAGAACAAGATATCTCTTGCTGAACTGTTTGATAGTAATCGTGGACAGCTCAATGAGAAGAAAATCTTGAATTTAATGAACATTGTTATTCAACTGAGAAAGGTCTGCAACCATCCAGAGTTGTTTGAGAGGAGTGAGGGAAGCACATACCTTTACTTTGGAAAGATTCCAAATTCCCTTCCTCCTCCTCCATTTGGGGAGTTAGAGGATGTATATTATTCGGGTGGTCACAACCCCATCTCATATGAGATACCAAAACTTGTCTATCAAGAAATTTTGCGGAGTTCTGTAACTCTCAGTTCAGATGTTGGTCATGGTATCTGCAGAGAATCTTTTCAAAAGCATTTTAATATTTTTAGACCAGAAAACATTTATCAATCTGTCTTCTCAGAAGATATGCATGTTAAAAGTGGAACTTTTGGGTTTACCCATTTGATGGGTTTATCTCCTCAAGAGGTGACATTTCTGGTTACTGGTTCTTTTATGGAGCGATTGTTATTCTCTATGATGAGATGGGAACAAAAATTCAGTAATGAAGTTGTAGACTCTCTTATGGAGACCATAGTTGATGATCTTGAATGTAGCTACCTTGAAAAAGGAAAAGTGAGAACTGTTGCCCGAATGTTGTTGGTACCATCAAGATCTGAGACTAAGTTTCTTCAAAACAGATTGCCAACAGGACTCAGCCATGCTCCTTTTGAGGCCTTGGTTGTCCCACACCAGGAGAGGATTTTATCAAATGCAAGGCTTCTCCACTCAGCTTACACATATATTCCAAAAAGTAGAGCACCCCCAATTGGTGCTCACTGCTCTGATAGGAACTTCTACTATAAAATGATTGAGGAACTACATGATCCATGGGTTAAGAGGATGTTTGTGGGATTTGCCCGTACTTCTGATTGTAATGGGCCTAGAAAGCCAGACAGTTCTCATCATTTAATTCAAGAAATCGACTCTGAACAACCGGTCTGTAAACCCGCACTTCAGTTAACACACAGTATTTTTGGGTCTTCTCCGCCTATGCAAAACTTTGACCCAGCAAAATTGCTTACTGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGAGCAGGAAATCATCGCGTTCTCTTGTTTGCTCAGATGACCAAGATGTTAAATATTTTGGAGGACTATATGAACTATAGAAAATATAAGTATTTTAGACTTGACGGATCAACATCTATTCAGGACCGTAGAGACATGGTCAGAGACTTTCAGCACAGGGCTGATATTTTCGTGTTCTTACTGAGTACAAGAGCCGGTGGATTGGGTATTAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCCATGGACAGAGCTCATCGTTTGGGTCAAACAAAAGATGTTACTGTCTACCGACTGATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTCAGAGCTAGTCAGAAAAGTACTGTACAGAATCTTGTCATGACCGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTGGTATCTTTGCTTCTGGATGATGTTCAGTTGCAGCAGAAATTTAAAACTATAACTGTCCAGGGTAGGGATAAGCAAAAGAAAAAACCTATGAAGGGTATTTTGGTAAATGAAGATGGTGATGCATCTTTGGAAGATGTGTCGAACTCTGTAGCCCTGGGTACAGCAGATCATGATCTTGCCGTAGATCCAGAGGGATCAAAATCCAGTAATAAAAAGAGAAAAACTGCTTCAGCTTCAAAAACTTTGAGACCAAAGAATTCTCATAAGACTAGTGAGTTTGATACCACACCTAGGGATGACGAATTGGATGATGTCCACTTAACTACTGATCCAGTCGTTCAGAGACCCAAGAGACCAAAGAGAACAAAGAAGAATGTGAATGAAATGTTTGAAGAGACTCTTACTGGGTCAGCTACCAAGGTCCCAGAGCAGACCCAATTTCAACCTCCCCAAGATGGAGGTTCCAAAATAGAATCAGCTCAAGACACCTAA 4572 0.4154 MDHRTKPNDSLSYSTLFNLQSLINFELPEQDDDFEYYGNSSQDESRNSRGGAVASHSNGNVNLLKKRSRSGNSDNEEKSGFHGTHTMEERYRSMLGDHIKKYQRRFKGTTASPDTNQVAVPFVKANNGLKAPKLGNERRRGLLDEETMSEWMNGSNAQKPGNLLDTDFVRQHGPERVMYEPAFVNIGDGVTYKIPPVYDKLAAMVNLPSFSDIHVEDFYLKGTLDLGSLAEMMASDKKFGNRNRAGMGETVSQYESLQARLKDTPVSNSAHKFSLKLSDADLNSSIPEGAAGSIKRSILSEGGILQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMDKFGKIWVNIVRRDLPRHHRNFTSFHRKQLIDAKRASENCQREVKMKVSRSLKWTRTASMRSRKLARDMLLFWKRIDKEMLEVRKREEKEAAEALRREQEIREAKRQQQRLNFLIQQTELYSHFMQNKSISSEALPMADENTNDENALINSSAAGGNAEEDPEEAELRKEALKAAQEAVSKQKMLTNAFDSECLRLRQTGESDSLQSEVSGASNIDLKTPSTMPVASTVRTPELFNGCLKDYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKVLPYWGGLSERTVLRKSMNPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSIIKPFMLRRVKKDVVSELTSKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGKIPNSLPPPPFGELEDVYYSGGHNPISYEIPKLVYQEILRSSVTLSSDVGHGICRESFQKHFNIFRPENIYQSVFSEDMHVKSGTFGFTHLMGLSPQEVTFLVTGSFMERLLFSMMRWEQKFSNEVVDSLMETIVDDLECSYLEKGKVRTVARMLLVPSRSETKFLQNRLPTGLSHAPFEALVVPHQERILSNARLLHSAYTYIPKSRAPPIGAHCSDRNFYYKMIEELHDPWVKRMFVGFARTSDCNGPRKPDSSHHLIQEIDSEQPVCKPALQLTHSIFGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSTSIQDRRDMVRDFQHRADIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFKTITVQGRDKQKKKPMKGILVNEDGDASLEDVSNSVALGTADHDLAVDPEGSKSSNKKRKTASASKTLRPKNSHKTSEFDTTPRDDELDDVHLTTDPVVQRPKRPKRTKKNVNEMFEETLTGSATKVPEQTQFQPPQDGGSKIESAQDT 1523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04338 1523 SMART helicmild6 1227 1310 IPR001650 -
Vivi6g04338 1523 MobiDBLite consensus disorder prediction 1445 1476 - -
Vivi6g04338 1523 CDD SF2_C_SNF 1189 1321 - -
Vivi6g04338 1523 Pfam Helicase conserved C-terminal domain 1201 1310 IPR001650 -
Vivi6g04338 1523 Pfam SNF2-related domain 598 885 IPR000330 GO:0005524|GO:0140658
Vivi6g04338 1523 Pfam DNA-binding domain 345 473 IPR020838 GO:0003677
Vivi6g04338 1523 Gene3D - 821 890 IPR027417 -
Vivi6g04338 1523 FunFam Putative DNA helicase INO80 555 833 - -
Vivi6g04338 1523 FunFam DNA helicase INO80-like protein 1169 1420 - -
Vivi6g04338 1523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 813 1366 IPR027417 -
Vivi6g04338 1523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 567 811 IPR027417 -
Vivi6g04338 1523 Coils Coil 422 461 - -
Vivi6g04338 1523 MobiDBLite consensus disorder prediction 40 68 - -
Vivi6g04338 1523 MobiDBLite consensus disorder prediction 69 87 - -
Vivi6g04338 1523 MobiDBLite consensus disorder prediction 491 512 - -
Vivi6g04338 1523 MobiDBLite consensus disorder prediction 1378 1399 - -
Vivi6g04338 1523 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 595 766 IPR014001 -
Vivi6g04338 1523 MobiDBLite consensus disorder prediction 1414 1523 - -
Vivi6g04338 1523 Gene3D - 1141 1409 IPR027417 -
Vivi6g04338 1523 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1201 1351 IPR001650 -
Vivi6g04338 1523 ProSiteProfiles DBINO domain profile. 350 475 IPR020838 GO:0003677
Vivi6g04338 1523 Gene3D - 579 820 IPR038718 -
Vivi6g04338 1523 MobiDBLite consensus disorder prediction 1379 1394 - -
Vivi6g04338 1523 MobiDBLite consensus disorder prediction 33 87 - -
Vivi6g04338 1523 MobiDBLite consensus disorder prediction 1489 1523 - -
Vivi6g04338 1523 PANTHER HELICASE SRCAP-RELATED 79 515 - -
Vivi6g04338 1523 SMART ultradead3 579 774 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04338 Vivi-Chr6 143646864 143663288 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04338 603 895 RAD5 or RAD16-like Gene Family AT5G22750 27.731 1.03e-23 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi6g04338 SNF2_N 9.9e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04338 K11665 - gmx:100810344 2518.04