Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04337 ATGGAAGAACGATACCGATCAATGCTTGGAGACCATATTAAGAAATACCAGAGGAGGTTTAAGGGTACCACGGCTAGTCCGGACACGAATCAGGTTGCTGTTCCGTTTGTAAAGGCTAACAATGGATTAAAAGCTCCCAAGCTGGGGAATGAACGTAGAAGAGGATTGCTTGATGAAGAGACTATGTCTGAATGGATGAATGGTTCAAATGCTCAGAAACCGGGGAACCTCCTTGATACGGATTTTGTCCGGCAACATGGCCCTGAGAGGGTTATGTATGAACCTGCATTTGTGAATATAGGGGACGGTGTGACTTATAAGATTCCTCCAGTTTATGATAAGTTGGCAGCAATGGTGAACCTTCCAAGCTTCTCAGATATCCATGTTGAGGACTTCTACCTTAAGGGTACATTGGATTTAGGCTCCTTGGCTGAAATGATGGCATCTGATAAAAAGTTTGGGAATAGAAACCGAGCAGGCATGGGGGAAACTGTATCCCAATATGAATCACTTCAAGCACGTCTAAAGGACACACCAGTTTCTAATTCAGCTCACAAGTTCAGTCTGAAACTATCTGATGCTGATTTGAATTCCTCCATTCCAGAGGGGGCAGCAGGAAGCATAAAGCGGTCTATTTTATCTGAGGGGGGTATATTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGAGACACTTATGAGATCATTGAAAGAAGCTTACCCAAGAAACAAAAGGTAAAGAAAGACCCTGCGTTAATAGAGAAAGAGGAAATGGATAAGTTTGGAAAGATTTGGGTAAATATTGTTAGAAGAGACCTACCAAGGCATCATAGGAATTTTACCTCTTTCCATCGAAAGCAGCTCATTGATGCTAAGAGGGCCTCAGAGAACTGTCAAAGAGAGGTTAAAATGAAAGTTAGTAGATCGCTTAAATGGACGAGAACTGCTAGCATGCGCTCCCGAAAACTAGCTAGAGACATGTTACTATTCTGGAAGCGAATAGATAAGGAGATGTTAGAAGTGAGGAAAAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGACGCGAGCAGGAGATTCGAGAAGCCAAGAGGCAGCAGCAAAGGCTAAATTTTCTAATACAACAGACTGAGCTATACAGTCACTTTATGCAGAACAAGTCAATATCTTCAGAAGCTCTACCCATGGCAGATGAAAATACAAATGATGAAAATGCACTGATCAACTCTTCAGCTGCTGGTGGTAACGCGGAGGAAGATCCCGAAGAGGCTGAATTGAGGAAGGAAGCTTTGAAAGCTGCTCAAGAAGCAGTTTCTAAGCAGAAAATGTTAACAAATGCTTTTGACAGTGAATGCTTGAGACTGCGCCAGACTGGTGAATCTGATTCACTTCAATCAGAAGTTTCTGGAGCAAGTAATATTGACTTGAAAACCCCCTCCACCATGCCCGTGGCATCGACAGTTCGGACACCTGAATTATTTAATGGCTGTCTGAAAGATTATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTACGAGCAGGGTTTAAATGGTATTCTTGCTGATGAGATGGGACTTGGAAAGACCATTCAGGCTATGGTTTTTTTAGCTCATTTAGCTGAGGAGAAAAACATATGGGGACCCTTTTTGGTTGTTGCACCTGCTTCTGTATTAAACAATTGGAATGAGGAACTCGAGCGCTTCTGCCCTGAACTGAAAGTACTTCCTTATTGGGGTGGGCTTTCAGAGCGGACAGTGCTTAGGAAAAGTATGAACCCAAAGGATCTTTATCGCAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTGTTAGTCTCTGATGAGAAGTATTTCCGGCGCGTGAAATGGCAGTATATGGTTTTAGATGAAGCTCAGGCAATTAAAAGTTCCAACAGTATAAGATGGAAGACACTCCTCAGCTTTAACTGTCGGAATCGCCTACTGCTGACCGGTACGCCCGTTCAGAATAATATGGCCGAGTTGTGGGCTCTTCTTCACTTCATTATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTAAACGAGCACCAACTTAATCGATTGCATTCAATTATAAAGCCTTTCATGCTTCGGCGTGTTAAGAAAGATGTAGTTTCTGAGCTGACTAGCAAAACTGAAGTTACTGTGCACTGCAAGTTAAGTTCTAGGCAACAAGCTTTCTATCAGGCAATTAAGAACAAGATATCTCTTGCTGAACTGTTTGATAGTAATCGTGGACAGCTCAATGAGAAGAAAATCTTGAATTTAATGAACATTGTTATTCAACTGAGAAAGGTCTGCAACCATCCAGAGTTGTTTGAGAGGAGTGAGGGAAGCACATACCTTTACTTTGGAAAGATTCCAAATTCCCTTCCTCCTCCTCCATTTGGGGAGTTAGAGGATGTATATTATTCGGGTGGTCACAACCCCATCTCATATGAGATACCAAAACTTGTCTATCAAGAAATTTTGCGGAGTTCTGTAACTCTCAGTTCAGATGTTGGTCATGGTATCTGCAGAGAATCTTTTCAAAAGCATTTTAATATTTTTAGACCAGAAAACATTTATCAATCTGTCTTCTCAGAAGATATGCATGTTAAAAGTGGAACTTTTGGGTTTACCCATTTGATGGGTTTATCTCCTCAAGAGGTGACATTTCTGGTTACTGGTTCTTTTATGGAGCGATTGTTATTCTCTATGATGAGATGGGAACAAAAATTCAGTAATGAAGTTGTAGACTCTCTTATGGAGACCATAGTTGATGATCTTGAATGTAGCTACCTTGAAAAAGGAAAAGTGAGAACTGTTGCCCGAATGTTGTTGGTACCATCAAGATCTGAGACTAAGTTTCTTCAAAACAGATTGCCAACAGGACTCAGCCATGCTCCTTTTGAGGCCTTGGTTGTCCCACACCAGGAGAGGATTTTATCAAATGCAAGGCTTCTCCACTCAGCTTACACATATATTCCAAAAAGTAGAGCACCCCCAATTGGTGCTCACTGCTCTGATAGGAACTTCTACTATAAAATGATTGAGGAACTACATGATCCATGGGTTAAGAGGATGTTTGTGGGATTTGCCCGTACTTCTGATTGTAATGGGCCTAGAAAGCCAGACAGTTCTCATCATTTAATTCAAGAAATCGACTCTGAACAACCGGTCTGTAAACCCGCACTTCAGTTAACACACAGTATTTTTGGGTCTTCTCCGCCTATGCAAAACTTTGACCCAGCAAAATTGCTTACTGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGAGCAGGAAATCATCGCGTTCTCTTGTTTGCTCAGATGACCAAGATGTTAAATATTTTGGAGGACTATATGAACTATAGAAAATATAAGTATTTTAGACTTGACGGATCAACATCTATTCAGGACCGTAGAGACATGGTCAGAGACTTTCAGCACAGGGCTGATATTTTCGTGTTCTTACTGAGTACAAGAGCCGGTGGATTGGGTATTAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCCATGGACAGAGCTCATCGTTTGGGTCAAACAAAAGATGTTACTGTCTACCGACTGATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTCAGAGCTAGTCAGAAAAGTACTGTACAGAATCTTGTCATGACCGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTGGTATCTTTGCTTCTGGATGATGTTCAGTTGCAGCAGAAATTTAAAACTATAACTGTCCAGGGTAGGGATAAGCAAAAGAAAAAACCTATGAAGGGTATTTTGGTAAATGAAGATGGTGATGCATCTTTGGAAGATGTGTCGAACTCTGTAGCCCTGGGTACAGCAGATCATGATCTTGCCGTAGATCCAGAGGGATCAAAATCCAGTAATAAAAAGAGAAAAACTGCTTCAGCTTCAAAAACTTTGAGACCAAAGAATTCTCATAAGACTAGTGAGTTTGATACCACACCTAGGGATGACGAATTGGATGATGTCCACTTAACTACTGATCCAGTCGTTCAGAGACCCAAGAGACCAAAGAGAACAAAGAAGAATGTGAATGAAATGTTTGAAGAGACTCTTACTGGGTCAGCTACCAAGGTCCCAGAGCAGACCCAATTTCAACCTCCCCAAGATGGAGGTTCCAAAATAGAATCAGCTCAAGACACCTAA 4314 0.4145 MEERYRSMLGDHIKKYQRRFKGTTASPDTNQVAVPFVKANNGLKAPKLGNERRRGLLDEETMSEWMNGSNAQKPGNLLDTDFVRQHGPERVMYEPAFVNIGDGVTYKIPPVYDKLAAMVNLPSFSDIHVEDFYLKGTLDLGSLAEMMASDKKFGNRNRAGMGETVSQYESLQARLKDTPVSNSAHKFSLKLSDADLNSSIPEGAAGSIKRSILSEGGILQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMDKFGKIWVNIVRRDLPRHHRNFTSFHRKQLIDAKRASENCQREVKMKVSRSLKWTRTASMRSRKLARDMLLFWKRIDKEMLEVRKREEKEAAEALRREQEIREAKRQQQRLNFLIQQTELYSHFMQNKSISSEALPMADENTNDENALINSSAAGGNAEEDPEEAELRKEALKAAQEAVSKQKMLTNAFDSECLRLRQTGESDSLQSEVSGASNIDLKTPSTMPVASTVRTPELFNGCLKDYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKVLPYWGGLSERTVLRKSMNPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSIIKPFMLRRVKKDVVSELTSKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGKIPNSLPPPPFGELEDVYYSGGHNPISYEIPKLVYQEILRSSVTLSSDVGHGICRESFQKHFNIFRPENIYQSVFSEDMHVKSGTFGFTHLMGLSPQEVTFLVTGSFMERLLFSMMRWEQKFSNEVVDSLMETIVDDLECSYLEKGKVRTVARMLLVPSRSETKFLQNRLPTGLSHAPFEALVVPHQERILSNARLLHSAYTYIPKSRAPPIGAHCSDRNFYYKMIEELHDPWVKRMFVGFARTSDCNGPRKPDSSHHLIQEIDSEQPVCKPALQLTHSIFGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSTSIQDRRDMVRDFQHRADIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFKTITVQGRDKQKKKPMKGILVNEDGDASLEDVSNSVALGTADHDLAVDPEGSKSSNKKRKTASASKTLRPKNSHKTSEFDTTPRDDELDDVHLTTDPVVQRPKRPKRTKKNVNEMFEETLTGSATKVPEQTQFQPPQDGGSKIESAQDT 1437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04337 1437 SMART helicmild6 1141 1224 IPR001650 -
Vivi6g04337 1437 Gene3D - 493 734 IPR038718 -
Vivi6g04337 1437 MobiDBLite consensus disorder prediction 1292 1313 - -
Vivi6g04337 1437 Gene3D - 735 804 IPR027417 -
Vivi6g04337 1437 Pfam Helicase conserved C-terminal domain 1115 1224 IPR001650 -
Vivi6g04337 1437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 725 IPR027417 -
Vivi6g04337 1437 MobiDBLite consensus disorder prediction 1359 1390 - -
Vivi6g04337 1437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 727 1280 IPR027417 -
Vivi6g04337 1437 PANTHER HELICASE SRCAP-RELATED 56 429 - -
Vivi6g04337 1437 MobiDBLite consensus disorder prediction 1403 1437 - -
Vivi6g04337 1437 MobiDBLite consensus disorder prediction 1293 1308 - -
Vivi6g04337 1437 Pfam DNA-binding domain 259 387 IPR020838 GO:0003677
Vivi6g04337 1437 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1115 1265 IPR001650 -
Vivi6g04337 1437 Gene3D - 1055 1323 IPR027417 -
Vivi6g04337 1437 MobiDBLite consensus disorder prediction 405 426 - -
Vivi6g04337 1437 FunFam DNA helicase INO80-like protein 1083 1334 - -
Vivi6g04337 1437 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 509 680 IPR014001 -
Vivi6g04337 1437 CDD SF2_C_SNF 1103 1235 - -
Vivi6g04337 1437 Pfam SNF2-related domain 512 799 IPR000330 GO:0005524|GO:0140658
Vivi6g04337 1437 Coils Coil 336 375 - -
Vivi6g04337 1437 MobiDBLite consensus disorder prediction 1328 1437 - -
Vivi6g04337 1437 FunFam Putative DNA helicase INO80 469 747 - -
Vivi6g04337 1437 ProSiteProfiles DBINO domain profile. 264 389 IPR020838 GO:0003677
Vivi6g04337 1437 SMART ultradead3 493 688 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04337 Vivi-Chr6 143646863 143663288 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04337 517 809 RAD5 or RAD16-like Gene Family AT5G22750 27.731 8.40e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi6g04337 SNF2_N 9e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04337 K11665 - gmx:100810344 2392.85