Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04305 ATGCAAAACACCGACCATTATGATTCGTACGACTATCGATGGCGTGACAGTGGTACATCTGATTCTGAATCCGACAATGGTCGGGATGACAGTAATTCGGTGTCCAGTGCGTACCAAGGTTCAAGTGATGGTGATGGCGATGGCGATGGTGATAGTCACGGTGAAAAATTTGTTGAATTTGATGCAGTTGTAGGTGATAGAACAGTGAAAATTAATGCCCTTACTGCTGATGAAATTCGTGCTATGGAATTCGGTACAGTTGATGAAGCTAATGTGTTTTATTTCAAGTATGCTAAATGTAAAGGGTTTGCCATTAGGAAAAGTGATGTTAGGACAAGATCGACTGAGGGTGGACAAACAATTATAATGAGGCAGTTTGTATGCAATAAACACGGTCTAAGAGATACAAAACACTTAAGGAGGCTTGATAGAAAAAGAGAACACAGACCTACGACCCGCACTAATTGTCCCGCTAGGCTTCGTGTGCATTACAACCCCCAGAAGGATAGTTATGTAGTGACATGTTTTGAAGAGGCTCACAACCATGAATTAACACCATCTAGGTTTGTCCACTTACACCCCATTTATCGTGAGATTACTGCAGCAGATAGAGCTCAAATTGACGGTCTACAGTCAAATGGAATTAGAACTTGTCATATAATGGGGTACATGGTTGCTCAGAAGGGTGGACACGATCGTGTTGGGTTTACAAAGAAGGATCTGTACAATTATTTTGATAGTAAAATGCGTGCTAATATTAAAGATGGTGACGTTGCCGCTGCTATAAATTATCTAACTGTGAAGTCATCTACTGATCCCATGTTATATGGTAAATATGCCGTAGGCATGGATGGACGAATGAAGTCTCTTTTTTGGGCTGATGGAAGCAGTAGATCTGACTATTTTTGTTTTGGCGATGTGATTGCGTTCGACACGACTTACAAGAAGAACAAATACAACTACCCATTGGTTATATTTTCAGGGTGTAACCACCACTCTCAGACAGTTATTTTAGGTGCTGCGTTGGTGTCAGATGAAACGACAGAGACGTATAAGTGGTTGTTGGAGTGTTTTTTAGAGTGCATGGAAAATAGATACCCAGCAGCAGTTGTAACAGACGGAGATGGGGCGATGAGGGAATCTATAAAACAGGTGTTTCCGGATGCGACACATCGTTTATGCGCTTGGCATTTGAACAAGAATGCGTCTGAGAATGTAAAGAACTCGGAATTTTTGAAAGATTTTCAAAAAGCCATGTACTCTAATTTTACAAAGGATCAATTTGAAGAGTTTTGGTCAAAAACAATTAAAGAAAACGGACTTGAAGGAAATCCTTGGGTTGCAAAAACGTACGAGAACAGGTCACTATGGGCAACTGCATATCTACGTGAGAAGTTTTTTGGACGTATAAGAACTACGTCTCAATGTGAAGCCGTCAATGCAGTCATCAAGAGTTATGTCAGGAAGAAAGGCTGCATTTTTGAATTCATGCACAATTTTGATCAGGCTATGAGATCTTATAGAAACAATGAACTGATTGCCGATTATAAATCAAAGTTTTCAGAACCTGTGATGACTACTCAACTGCGTGCCCTTGAGAGCCATGCTGCGAATGTTTATACTATGGAGATTTTCAAGGAAGTCAGAGATGAAATAGTGAAGGCTGGATCATTGATTGTTAAGGAAAAGTTAATTCGCAACGGATTTAAGACTTATCGATTTACAAAATATTGTTGTGATAACTATGACGTAGAGGTTGTGTATGATGGTGAAACACTTCAATGTGAGTGTAGGTTATGGGATTCTCATGGGATTCCATGTTCTCATATGTTTGGTGTCATGATGGAAGAACATGTTAGTCTCATTCCCACCGGTTTGATTTTGTCGAGATGGACGAAGGATGCAAAAATTCAGTACTTGAACATGAATTGTAATGGTTCTGATGATTCTAAAATGATTGAGCTAGCTCGGTTTGGTGCATATTGTTCTGCATTTACTGCCTTTTGCAATGAAGCTTCAAAAAGGGAAGGTGTTTATGGGGAAATAATGGGTGACATTCTGAAGTTACACAAAAAGTATTGCAGTACGGACGATCCTATTTTGGCATCGAACTCAGTTGTAGGTGATCCAAATATTGTGAATAGCAAAGGTGCTCCAAAGAAAAGAAAGAATGACATAAAATCTATTAGGCGATGTTCTAAATGCAACAGTAGAACTCATAATGCAAGGAGTTGTTCGGTTGCGGAAAACGCGCCATCTGAACAAAATGTTGGTATGACGTCGCGGCCAGTAACTGATTCATTCAGCCAGATTGTGAAGAACAAGAATGGAAAAAGAGGTCGCATTGGTGGAAGTAGTGTGCAAAATAAATGTACAGAACCACCGAACTCTCGTGGCGCGAATGTGACAACGACTTCTCGCGCGGAAGTTGGAAGCACAAGCATACCCATGCCTGCAATGATGGATGAACAATGGGCTGAGTATTTAGGTAATTACGTTTACGATGAGGTTGAACAGAATGTCGATCTCAGTGACATTGAAAGTGATGAAGGTGAATAA 2559 0.4025 MQNTDHYDSYDYRWRDSGTSDSESDNGRDDSNSVSSAYQGSSDGDGDGDGDSHGEKFVEFDAVVGDRTVKINALTADEIRAMEFGTVDEANVFYFKYAKCKGFAIRKSDVRTRSTEGGQTIIMRQFVCNKHGLRDTKHLRRLDRKREHRPTTRTNCPARLRVHYNPQKDSYVVTCFEEAHNHELTPSRFVHLHPIYREITAADRAQIDGLQSNGIRTCHIMGYMVAQKGGHDRVGFTKKDLYNYFDSKMRANIKDGDVAAAINYLTVKSSTDPMLYGKYAVGMDGRMKSLFWADGSSRSDYFCFGDVIAFDTTYKKNKYNYPLVIFSGCNHHSQTVILGAALVSDETTETYKWLLECFLECMENRYPAAVVTDGDGAMRESIKQVFPDATHRLCAWHLNKNASENVKNSEFLKDFQKAMYSNFTKDQFEEFWSKTIKENGLEGNPWVAKTYENRSLWATAYLREKFFGRIRTTSQCEAVNAVIKSYVRKKGCIFEFMHNFDQAMRSYRNNELIADYKSKFSEPVMTTQLRALESHAANVYTMEIFKEVRDEIVKAGSLIVKEKLIRNGFKTYRFTKYCCDNYDVEVVYDGETLQCECRLWDSHGIPCSHMFGVMMEEHVSLIPTGLILSRWTKDAKIQYLNMNCNGSDDSKMIELARFGAYCSAFTAFCNEASKREGVYGEIMGDILKLHKKYCSTDDPILASNSVVGDPNIVNSKGAPKKRKNDIKSIRRCSKCNSRTHNARSCSVAENAPSEQNVGMTSRPVTDSFSQIVKNKNGKRGRIGGSSVQNKCTEPPNSRGANVTTTSRAEVGSTSIPMPAMMDEQWAEYLGNYVYDEVEQNVDLSDIESDEGE 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04305 852 MobiDBLite consensus disorder prediction 781 812 - -
Vivi6g04305 852 Pfam SWIM zinc finger 585 612 IPR007527 GO:0008270
Vivi6g04305 852 MobiDBLite consensus disorder prediction 743 774 - -
Vivi6g04305 852 Pfam FAR1 DNA-binding domain 93 185 IPR004330 -
Vivi6g04305 852 SMART 26again6 593 620 IPR006564 GO:0008270
Vivi6g04305 852 MobiDBLite consensus disorder prediction 8 28 - -
Vivi6g04305 852 MobiDBLite consensus disorder prediction 1 55 - -
Vivi6g04305 852 MobiDBLite consensus disorder prediction 743 815 - -
Vivi6g04305 852 Pfam MULE transposase domain 307 401 IPR018289 -
Vivi6g04305 852 ProSiteProfiles Zinc finger SWIM-type profile. 582 618 IPR007527 GO:0008270
Vivi6g04305 852 PANTHER OS01G0519700 PROTEIN 79 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04305 Vivi-Chr6 142986239 142989672 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi6g04305 MULE 1.4e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04305 - - vvo:131620026 1520.75