Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04287 ATGGAGAATGAGCAATGGTGCACCATATGCTCTAAAATGGTGAGCCCAATGAGTGAATATGAAAACAAATGTCCCTTTTGTGATACACAATTTAGTGATGCAATGGAAAATCTAATTGATCATCATAATAATGATGCTATTGATTTAAGGTCGGCTTGGGTTTTCTCACTTTATGCACCAATTTTTCTTGGTTTGATGAATGCTTTTACTCCTTCTCTAGCAACAATTTCTTCACAAGCAAGCAGTACATCAAGAAATGATGAGGATTTGGAACAAGAGAGAGGAAATTACAATGAACTTGTAATTGGAAGAAGGAGAAGAACTTCAACTTACATGATGCATCTCTTTAGAGGACTTCATGTTAGAATGGTTTCAGAAAATGAAAACATAGAACAAAATAGAAATATTATTGACAACAATAATAATATTGTTAATAATAATAACAACAATAGTAATAATAATAGTATACTTGTTATTGATCCATTAAATGAAGGTGCATTAATTGTGAGAGGACCCAATTTGAATCATACAAATTTAAATAGGTCAAATGAAAATAATATTAATACTATTGGATCTTTGAATGATTTTGTGGATGGAAGTGGATTTGATTTATTGCTACAACAATTGGCACAAATTACTCCGAGTGGTTATGCAAGTGTGAATCCACCAACAAAGAAGGTAGCAATTGAAGCAATGGAAAATATGATAAATGATGAGACATTGCCATGCACAATATGTTTAGAAGATGTTGAGATTGGAAGTGTTGCTAAAGAAATGCCATGCAAGCATAAGTTTCACAGTGAATGTATTGTTTCATGGCTTAAACTACATAGTTCTTGTCCAGTTTGTAGGTTTCAAATGCCTTGTGAGGATTCAAATGTTTTGGCTAATTTGGAAAATGGAAATAGAGAGATTCAAAATAATGAGGTTGTGAGGAGAGGTAGAAATGGAAGGAGGAATTGGTTTCCAGTGCTTCAATCTTTTAATAATTTTCTTCCTTGA 1002 0.3253 MENEQWCTICSKMVSPMSEYENKCPFCDTQFSDAMENLIDHHNNDAIDLRSAWVFSLYAPIFLGLMNAFTPSLATISSQASSTSRNDEDLEQERGNYNELVIGRRRRTSTYMMHLFRGLHVRMVSENENIEQNRNIIDNNNNIVNNNNNNSNNNSILVIDPLNEGALIVRGPNLNHTNLNRSNENNINTIGSLNDFVDGSGFDLLLQQLAQITPSGYASVNPPTKKVAIEAMENMINDETLPCTICLEDVEIGSVAKEMPCKHKFHSECIVSWLKLHSSCPVCRFQMPCEDSNVLANLENGNREIQNNEVVRRGRNGRRNWFPVLQSFNNFLP 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04287 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 129 288 - -
Vivi6g04287 333 ProSiteProfiles Zinc finger RING-type profile. 243 284 IPR001841 -
Vivi6g04287 333 SUPERFAMILY RING/U-box 227 289 - -
Vivi6g04287 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 290 IPR013083 -
Vivi6g04287 333 Pfam Ring finger domain 243 284 IPR001841 -
Vivi6g04287 333 SMART ring_2 243 283 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04287 Vivi-Chr6 142736284 142737603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04287 138 302 C3H Transcription Factor Family AT1G26800 28.916 1.08e-20 87.0