Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04252 ATGGGTTGGATTCCGTGTTCTGGAAATTCAGGAACCAAGAAGAAGATTGTGAAGATGGAAGTTCAAGATAGTGTTGCTCCTCAGATTAAACCTACCCAAGGGAAATTGAAGAGGAGTTCATCAACAAACTCCAAGGATAAATCTAAAAACGGGAGCACTCAACACATTGCATCACAGACTTTCTCATTTCGCGAGTTGGCATCTGCAACTAGAAATTTTAAAGCAGAATGTCTTTTAGGGGAGGGAGGCTTTGGTAGAGTATACAAAGGTCATATGGAAAGTATTAATCAGGTTGTCGCAATCAAGCAACTTGACCGAAACGGACTCCAAGGGAATCGGGAATTCCTTGTTGAAGTATTGATGTTAAGTCTACTTCACCATCCTAACCTTGTCAATCTTCTTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATTTATGTCATTAGGATCCTTGGAAGACCACTTGCATGATATATCTCCTGGTAAGAAGCGACTTGATTGGAACACGCGAATGAAAATAGCTGCTGGGGCAGCAAAGGGGTTGGAATATCTACACGACAAAGCTAATCCTCCGGTTATATACCGAGATTTGAAGTGCTCCAACATTTTGCTTGGCGAAGAGTATCACCCAAAGTTGTCTGATTTTGGTTTGGCGAAACTTGGCCCGGTCGGAGAAAACACCCATGTATCGACAAGGGTTATGGGAACCTACGGATATTGTGCTCCAGAGTATGCAATGACCGGGCAACTCACTCTCAAATCAGATGTTTATAGTTTCGGTGTAGTTCTTCTAGAAATAATCACAGGAAGGAAAGCAATCGACTATTCAAAATCTGCAGCCGAGCAGAATCTCGTTGCATGGGCCAGACCATTGTTCAAAGATCGAAAGAAATTTTCGCAAATGGCCGATCCTATGCTTCAAGGTCAGTATCCTTCAAGAGGGCTATACCAGGCTCTTGCTGTTGCAGCAATGTGTGTTCAAGAACAAGCTAATATGCGACCGGTTATAGCTGACGTTGTCACTGCTTTATCTTACCTTGCTTCACAAAGATACAATCACAATACACAGACAGTCCAGAACTCGCACCGCGCTCCTCGCACTCCTCCTAGAACCAGAAGGGGACAATGA 1140 0.4333 MGWIPCSGNSGTKKKIVKMEVQDSVAPQIKPTQGKLKRSSSTNSKDKSKNGSTQHIASQTFSFRELASATRNFKAECLLGEGGFGRVYKGHMESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLLGYCADGDQRLLVYEFMSLGSLEDHLHDISPGKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEEYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDYSKSAAEQNLVAWARPLFKDRKKFSQMADPMLQGQYPSRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRYNHNTQTVQNSHRAPRTPPRTRRGQ 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04252 379 SMART serkin_6 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04252 379 Gene3D Transferase(Phosphotransferase) domain 1 150 371 - -
Vivi6g04252 379 MobiDBLite consensus disorder prediction 23 55 - -
Vivi6g04252 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vivi6g04252 379 SUPERFAMILY Protein kinase-like (PK-like) 51 347 IPR011009 -
Vivi6g04252 379 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Vivi6g04252 379 FunFam Serine/threonine-protein kinase PBS1 150 365 - -
Vivi6g04252 379 FunFam Serine/threonine-protein kinase PBS1 45 149 - -
Vivi6g04252 379 Pfam Protein tyrosine and serine/threonine kinase 76 346 IPR001245 GO:0004672|GO:0006468
Vivi6g04252 379 MobiDBLite consensus disorder prediction 358 379 - -
Vivi6g04252 379 CDD STKc_IRAK 79 347 - -
Vivi6g04252 379 Gene3D Phosphorylase Kinase; domain 1 33 149 - -
Vivi6g04252 379 MobiDBLite consensus disorder prediction 26 55 - -
Vivi6g04252 379 ProSiteProfiles Protein kinase domain profile. 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04252 379 PIRSF ILK 9 365 - -
Vivi6g04252 379 PANTHER OS07G0668900 PROTEIN 35 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04252 Vivi-Chr6 142191344 142194198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04252 36 352 Glycoside Hydrolase AT3G07070 67.823 4.94e-165 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vivi6g04252 PK_Tyr_Ser-Thr 5.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04252 - - gmx:100499648 653.669