Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04248 ATGATGGATATTGAAGAAGTAGAAAGAGTAGTTGTTGCCAAACCAGTTGCTTCAAGGCCAAATTGTTCTACTTTCAAATCTTTCTCGGAGCTTCTAGCAGGTGCTATCAATGCCAATCCTCCAATTGCATCTTCTTCTCAAACTACAACTTCTGCAATTAGACCAAAGACAGTCAGGTTCAAGCCACCATTGTATCTCCCCCCTTCTCAGGCTGACATTTTTAGAGGTGAACTTAGCAATTCTTCTGACATGGATCCTAAACCTGATACCAATCAGTCTCTCATATACAAGCCAATGGCAAAATTCGTGTCACAGACAACTGTCTCTCTTTTGGCAAACATGGGAATTTGTAGTACTAGTCAGCCACAACCACAGCAATCAATGGAGGCCAATCTTCAGAGTCTAAACCATGACAAATTTAGATCTAACAAAACCTCAAATTTTCATCAGAACATTACTACTACCCTACCTACAGAAACATACCAGGCCACTGAACCTTGTAAGACAGCGGCACAACAGAACTTGGAGGAAGACCAAAAAGCTTTAACGTCATCATCCACAGTGAATGCGGATAGACCTTCATATGATGGATATAACTGGAGAAAATACGGACAGAAGCAAGTAAAAGGAAGCGAGTATCCTCGAAGTTATTACAAATGCACACATCCTAATTGTCCAGTTAAGAAGAAAGTTGAAAGATCATTTGATGGCGAGATTGCTGAAATTGTTTACAAAGGCGAACACAATCATGGAAAACCGCAACTTCTAAAGCGCAACGCGGGAGCGACACAAGGATCAGGAATGGTTTCTGACGGAATGGTTCAAGATACATTATGGAGTAATAATAGTAATCAGAATGAAGGAAGAATAGAGAATCATGTCAAATCTTCACAGGCTAATGATTCTACTCTTGAAAATTCTTGTGGTTTAAGCGGGGATTGTGAGGAAGGAAGCAAAGGATTCGAGGCAGACGAAGATGATCCTAGAAGTAAAAGAAGGAAAAACGAGAACCAATCAAACGAAGCGGCAGCATCAGAAGAAGGTATAGTAGAGCCACGGACCGTGATGCAAAACTCAGTGGATTCTGATATCCTTGGAGACGGCTTTCGCTGGAGAAAATATGGACAGAAGGTGGTGAAGGGAAATCCATATCCCAGAAGTTACTATAGATGTACTCATATAAAGTGCAACGTTCGCAAGCACGTGGAGAGAGCAATAGATGATCCAAAATCATTTGTGACTACGTATGAAGGAAAGCACAACCATGACATACCACTCAAGAACACATCAACTGTAGCATCATCTGAAAAGGATTCTCTTAGTAAAGATAAACCATATTGA 1341 0.4079 MMDIEEVERVVVAKPVASRPNCSTFKSFSELLAGAINANPPIASSSQTTTSAIRPKTVRFKPPLYLPPSQADIFRGELSNSSDMDPKPDTNQSLIYKPMAKFVSQTTVSLLANMGICSTSQPQPQQSMEANLQSLNHDKFRSNKTSNFHQNITTTLPTETYQATEPCKTAAQQNLEEDQKALTSSSTVNADRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGEIAEIVYKGEHNHGKPQLLKRNAGATQGSGMVSDGMVQDTLWSNNSNQNEGRIENHVKSSQANDSTLENSCGLSGDCEEGSKGFEADEDDPRSKRRKNENQSNEAAASEEGIVEPRTVMQNSVDSDILGDGFRWRKYGQKVVKGNPYPRSYYRCTHIKCNVRKHVERAIDDPKSFVTTYEGKHNHDIPLKNTSTVASSEKDSLSKDKPY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04248 446 FunFam WRKY transcription factor 181 254 - -
Vivi6g04248 446 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 126 431 IPR044810 GO:0003700
Vivi6g04248 446 MobiDBLite consensus disorder prediction 322 340 - -
Vivi6g04248 446 MobiDBLite consensus disorder prediction 420 446 - -
Vivi6g04248 446 ProSiteProfiles WRKY domain profile. 196 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g04248 446 SUPERFAMILY WRKY DNA-binding domain 192 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g04248 446 ProSiteProfiles WRKY domain profile. 360 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g04248 446 Gene3D WRKY domain 177 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g04248 446 Gene3D WRKY domain 350 426 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g04248 446 Pfam WRKY DNA -binding domain 196 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g04248 446 Pfam WRKY DNA -binding domain 367 422 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g04248 446 MobiDBLite consensus disorder prediction 259 309 - -
Vivi6g04248 446 SUPERFAMILY WRKY DNA-binding domain 359 425 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g04248 446 MobiDBLite consensus disorder prediction 251 353 - -
Vivi6g04248 446 SMART WRKY_cls 194 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g04248 446 SMART WRKY_cls 365 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g04248 446 FunFam WRKY transcription factor 57 351 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04248 Vivi-Chr6 142126148 142129345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04248 85 426 WRKY Transcription Factor Family AT2G37260 46.113 3.60e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi6g04248 WRKY 2.8e-25 CL0274