Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04243 ATGTTGGATCTCAATCTCAACGCTGATTCCGTTTTCCACAACCACACTCTTCCACTCTCCGCCGCGCAAATGGAAAGCTCCGGCAGCTTTGATTCCTCCGTCGTCAACGCCGCCGACACTGAGGATTCATGCTCGTACGGCGAAGCCTACGCTTACAACTTCGCTATACTCAACAGCAACAACTGTTCTGTCGACAACAACGCTAACTTCTCCGGTGAGCTTCAACGCTCTGGTGCCGGAGAAGCTGGTGTACGGACAATTCAGCTTTTTCCTGCTAATGAATCGGGAATCTCGCCGTCGGATGGTAGAAACTGGATGAGTTTCTCGTCCGATCATCACGGTGGCGTGCCGGAGCAGATTGTTGTTGCTCCACGGCCTCAGCAGGTAAAGAAGAGTCGTCGTGGACCGAGGTCGCGGAGTTCGCAGTATCGTGGCGTTACTTTCTACCGGAGAACGGGAAGATGGGAATCGCATATTTGGGATTGTGGAAAACAAGTTTACTTAGGTGGATTTGACACCGCGCATGCTGCAGCAAGAGCATATGATCGAGCTGCAATCAAGTTCCGTGGTGTTGATGCTGATATTAATTTCAATGTTAGCGATTATGATGAAGATATAAAGCAGATGAGTAACTTTACCAAGGAAGAGTTTGTGCATATTCTGCGTAGACAGAGCACTGGTTTCTCGAGGGGAAGCTCCAAGTACAGGGGAGTTACTCTGCATAAATGTGGACGATGGGAAGCTCGCATGGGACAGTTTCTTGGGAAGAAGTATATATATCTTGGTCTATTCGATAGTGAGCTAGACGCTGCAAGAGCTTATGATAAGGCTGCTATAAAATGCAATGGAAGAGAAGCAGTTACAAATTTTGAGGCAAGCTCTTATGAAGGGGAGTTAGTTTCTCAGTGTGATAACGAAGATAGCAAGCAGAATCTTGATCTGAACTTGGGTATAGCCCCTCCTGCTAACTCGGATTTTCAGAATGGGACTGGTTTAGAAGTTCAGCGTAGCTGGGATGATATGCCTGTTATTAAGAGTGCTATGTTTGAGGACTCTGGGTCAAGATCAATCAATACTCAGCCACCTTATGGCTTTTCCATAGCATCTGAACATCAACCTTCATTTTGGAATGGTACCAATTACTTTCCTATGTGTAAGGAAAGAGCACTAGAGAATAGGATGGAAGCTGGTGGTCCCGTTCCAAATTGGGCATGGCAACTCCAAAGTCCTTATAATAACGGGTCAACTTTGATTCCACCTAATTTCTCTGCTGCAGCATCATCAGGATTCCCTTCATCAGCCACAATACCATCAGCTGCGGATAGTAGTCAACTTCATTTTCCAAACATGGCATACCTTCACCCTCATTTCCCTCCTCCAATGACCAACTCCAGCACCATACCCCCCTTCTATTGCAGGAGCTGA 1425 0.4674 MLDLNLNADSVFHNHTLPLSAAQMESSGSFDSSVVNAADTEDSCSYGEAYAYNFAILNSNNCSVDNNANFSGELQRSGAGEAGVRTIQLFPANESGISPSDGRNWMSFSSDHHGGVPEQIVVAPRPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELDAARAYDKAAIKCNGREAVTNFEASSYEGELVSQCDNEDSKQNLDLNLGIAPPANSDFQNGTGLEVQRSWDDMPVIKSAMFEDSGSRSINTQPPYGFSIASEHQPSFWNGTNYFPMCKERALENRMEAGGPVPNWAWQLQSPYNNGSTLIPPNFSAAASSGFPSSATIPSAADSSQLHFPNMAYLHPHFPPPMTNSSTIPPFYCRS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04243 474 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 105 322 - -
Vivi6g04243 474 ProSiteProfiles AP2/ERF domain profile. 234 291 IPR001471 GO:0003700|GO:0006355
Vivi6g04243 474 Pfam AP2 domain 233 283 IPR001471 GO:0003700|GO:0006355
Vivi6g04243 474 Pfam AP2 domain 142 190 IPR001471 GO:0003700|GO:0006355
Vivi6g04243 474 SUPERFAMILY DNA-binding domain 141 200 IPR016177 GO:0003677
Vivi6g04243 474 CDD AP2 142 200 IPR001471 GO:0003700|GO:0006355
Vivi6g04243 474 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700|GO:0006355
Vivi6g04243 474 Gene3D AP2/ERF domain 233 292 IPR036955 GO:0003700|GO:0006355
Vivi6g04243 474 FunFam AP2-like ethylene-responsive transcription factor 141 200 - -
Vivi6g04243 474 CDD AP2 233 293 IPR001471 GO:0003700|GO:0006355
Vivi6g04243 474 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700|GO:0006355
Vivi6g04243 474 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700|GO:0006355
Vivi6g04243 474 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700|GO:0006355
Vivi6g04243 474 SMART rav1_2 234 297 IPR001471 GO:0003700|GO:0006355
Vivi6g04243 474 SMART rav1_2 142 204 IPR001471 GO:0003700|GO:0006355
Vivi6g04243 474 SUPERFAMILY DNA-binding domain 233 292 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04243 Vivi-Chr6 142082343 142085173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04243 121 324 AP2-EREBP Transcription Factor Family AT4G36920 78.537 5.96e-95 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vivi6g04243 AP2 1.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04243 K09284 - gmx:100797238 637.876