Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04242 ATGTTGGATCTCAATCTCAACGCTGATTCCGTTTTCCACAACCACACTCTTCCACTCTCCGCCGCGCAAATGGAAAGCTCCGGCAGCTTTGATTCCTCCGTCGTCAACGCCGCCGACACTGAGGATTCATGCTCGTACGGCGAAGCCTACGCTTACAACTTCGCTATACTCAACAGCAACAACTGTTCTGTCGACAACAACGCTAACTTCTCCGGTGAGCTTCAACGCTCTGGTGCCGGAGAAGCTGGTGTACGGACAATTCAGCTTTTTCCTGCTAATGAATCGGGAATCTCGCCGTCGGATGGTAGAAACTGGATGAGTTTCTCGTCCGATCATCACGGTGGCGTGCCGGAGCAGATTGTTGTTGCTCCACGGCCTCAGCAGGTAAAGAAGAGTCGTCGTGGACCGAGGTCGCGGAGTTCGCAGTATCGTGGCGTTACTTTCTACCGGAGAACGGGAAGATGGGAATCGCATATTTGGGATTGTGGAAAACAAGTTTACTTAGGTGGATTTGACACCGCGCATGCTGCAGCAAGAGCATATGATCGAGCTGCAATCAAGTTCCGTGGTGTTGATGCTGATATTAATTTCAATGTTAGCGATTATGATGAAGATATAAAGCAGATGAGTAACTTTACCAAGGAAGAGTTTGTGCATATTCTGCGTAGACAGAGCACTGGTTTCTCGAGGGGAAGCTCCAAGTACAGGGGAGTTACTCTGCATAAATGTGGACGATGGGAAGCTCGCATGGGACAGTTTCTTGGGAAGAAAGCTTATGATAAGGCTGCTATAAAATGCAATGGAAGAGAAGCAGTTACAAATTTTGAGGCAAGCTCTTATGAAGGGGAGTTAGTTTCTCAGTGTGATAACGAAGATAGCAAGCAGAATCTTGATCTGAACTTGGGTATAGCCCCTCCTGCTAACTCGGATTTTCAGAATGGGACTGGTTTAGAAGTTCAGCGTAGCTGGGATGATATGCCTGTTATTAAGAGTGCTATGTTTGAGGACTCTGGGTCAAGATCAATCAATACTCAGCCACCTTATGGCTTTTCCATAGCATCTGAACATCAACCTTCATTTTGGAATGGTACCAATTACTTTCCTATGTGTAAGGAAAGAGCACTAGAGAATAGGATGGAAGCTGGTGGTCCCGTTCCAAATTGGGCATGGCAACTCCAAAGTCCTTATAATAACGGGTCAACTTTGATTCCACCTAATTTCTCTGCTGCAGCATCATCAGGATTCCCTTCATCAGCCACAATACCATCAGCTGCGGATAGTAGTCAACTTCATTTTCCAAACATGGCATACCTTCACCCTCATTTCCCTCCTCCAATGACCAACTCCAGCACCATACCCCCCTTCTATTGCAGGAGCTGA 1380 0.4696 MLDLNLNADSVFHNHTLPLSAAQMESSGSFDSSVVNAADTEDSCSYGEAYAYNFAILNSNNCSVDNNANFSGELQRSGAGEAGVRTIQLFPANESGISPSDGRNWMSFSSDHHGGVPEQIVVAPRPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEASSYEGELVSQCDNEDSKQNLDLNLGIAPPANSDFQNGTGLEVQRSWDDMPVIKSAMFEDSGSRSINTQPPYGFSIASEHQPSFWNGTNYFPMCKERALENRMEAGGPVPNWAWQLQSPYNNGSTLIPPNFSAAASSGFPSSATIPSAADSSQLHFPNMAYLHPHFPPPMTNSSTIPPFYCRS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04242 459 SUPERFAMILY DNA-binding domain 233 277 IPR016177 GO:0003677
Vivi6g04242 459 FunFam AP2-like ethylene-responsive transcription factor 141 200 - -
Vivi6g04242 459 CDD AP2 142 200 IPR001471 GO:0003700|GO:0006355
Vivi6g04242 459 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 105 307 - -
Vivi6g04242 459 CDD AP2 233 278 IPR001471 GO:0003700|GO:0006355
Vivi6g04242 459 Pfam AP2 domain 142 190 IPR001471 GO:0003700|GO:0006355
Vivi6g04242 459 Gene3D AP2/ERF domain 233 277 IPR036955 GO:0003700|GO:0006355
Vivi6g04242 459 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700|GO:0006355
Vivi6g04242 459 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700|GO:0006355
Vivi6g04242 459 SMART rav1_2 234 282 IPR001471 GO:0003700|GO:0006355
Vivi6g04242 459 SMART rav1_2 142 204 IPR001471 GO:0003700|GO:0006355
Vivi6g04242 459 SUPERFAMILY DNA-binding domain 141 200 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04242 Vivi-Chr6 142082343 142085174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04242 121 309 AP2-EREBP Transcription Factor Family AT4G36920 73.171 4.01e-81 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g04242 AP2 6.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04242 K09284 - gmx:100797238 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04242 6 142082343 142085174 Vivi6g04242 6 142082343 142085174 ECH