Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04240 ATGGAGAGTTCTCTACTCTTCTTCTTTCTCTCCTTCACAACTTCACTCTTTCTCCTTCCCCCTTTTTCATCTTCTCAGATCATGCAAGGTTTTGTAAGTTTGGACTGTGGAGGGACAGAAAGTTTCACCGATGAAATAGGTCTTGATTGGACTCCTGATAATAAGCTTACATATGGAGAAATAGCCACTATATCTGTTGCGAACGAGACGCGGAAGCAATACACGACGTTACGATACTTTCCTGCTGATTCTAGGAAATATTGCTACACTCTTGATGTTATTAGTAGGACGAGGTATTTGTTAAGGGCGACTTTCTTGTATGGAAATTTTGATAAAAACAATGTTTATCCTAAGTTTGATATTTCTGTTGGAGCTACTCATTGGTCGACGATTGTTATATCGGATGCTGATAGTGTAGAAATGAGAGAGCTTATATTTTTGGCTTCGAGTTCGACTGTGAGTGTGTGTTTATCGAATGCAACAACGGGGCAGCCGTTTCTATCTACGCTTGAGCTTCGACAATTCAATGGTTCGGTTTATTTTACTGAGTTTGAGAAACAATTTTACCTGAGTGTCTCTGCAAGGATCAATTTTGGTGCAGAGAGTGATGCTCCAATCAGGTACCCTGATGATCCTTTTGATAGAATTTGGATGTCGGATTCTGTTAAGAAAGCAAATTATCTCGTTGATGTTGCTGCTGGCACCGAGAAAATTTCTACCAATGAACCAATTTTTGTTAACCGAGATGATATACCACCGATGAAAGTGATGCAGACAGCGGTAGTAGGTACAAATGGATCTCTAACTTACCGGTTGAATTTGGATGGTTTTCCTGGCACTGCTTGGGCAGTCACCTATTTTGCAGAGATTGAAGATTTGCGTCCAACTGAGTCTAGAAAATTCAGGCTTATGCTTCCAGGCCAGCCCGAAATTAGCAAGATCATTGTAAATATTGAAGAAAATGCTTTTGGGAAATATCGCCTTTATGAACCGGGATTTGTCAATCTAACCCTACCTTTTGTGCTTTCCTTTAAATTCGGCAAGACAACTGATTCGTCCAAGGGGCCTCTCCTTAATGCCATGGAGATAAATAAGTATCTTGAGAAAAATAATGGTTCACCGGATGTTGAAGCTATTTCGGGAGTGCTTTCTCGCTACTCTTCAGCAAACTGGACTCAAGAAGGAGGTGATCCATGTCTTCCTGTTTCCTGGTCATGGATCCACTGTAGCTCAGATCCACAACCAAGAATAATTTCAATCTTGTTATCCAGTAAAAACTTGACTGGGAATATTCCTTCAGATATTACCAAATTGGTTGGTCTGGTTGAACTATGGCTTGATGGAAATATGTTGACCGGCCCAATACCCGATTTTACTGGGTGCACGGACTTAAAGATCATCCATCTTGAAAATAATCAGTTCACCGGTGAGCTCCCAGCCTCCTTGGTGAATCTTCCGAGTTTGAGGGAACTATATGTTCAAAATAATATGCTATCTGGAGCAGTACCGCCAGAGCTTCTAAGCAAGAATTTGGTTTTAAATTACTCCGGAAACATTAACCTACATAAAGGAAGCAAAACAAAGAGCCACATATATATTATTATTGGTTCAGCAGTTGGGGCTTCTGTTCTACTTTTGGCTACTGTTATATCTTGCTTGGTTATGCATAAAGGCAAGAAAAAATATTATGAGAAAGACCACATAGTTTCTGTCCCTACTCAAAGGCCGGCTTCTTGGAAGAGTGATGATCCTGCAGAATCGGCTCACTGCTTCAGCTTAGCTGAAATTGAAAGTGCTACAAACAACTTTGAGAAAAGAATCGGTTCTGGTGGTTTTGGAATTGTATACTATGGAAAACTGAAAGAAGGAAAAGAGATAGCAGTTAAAGTTCTTAGGAACAATTCCTATCAAGGCAAGCGCGAGTTCTCCAATGAGGTGACTCTTCTATCAAGAATACATCACAGAAACTTGGTACAACTTCTTGGGTATTGTCGAGAAGAAGATAATAGTATTCTCGTGTACGAGTTCATGCATAATGGCACACTCAAGGAACATCTCTATGGCCCTTTAGTGCACGGACAAAGTATAAGTTGGATTAAACGCCTTGAGATTGCAGAAGACTCTGCCAAAGGAATTGAATACCTTCATACAGGTTGTGTTCCTGTAGTTATTCATAGAGACTTGAAAAGTAGCAATATTCTTCTTGACACACACATGAGAGCCAAGGTTTCAGATTTCGGTCTTTCCAAACTCGCTGTTGATGGAGTCTCCCATGTTTCAAGCATAGTTCGCGGAACAGTAGGATACCTGGATCCTGAGTACTATATTTCCCAACAACTAACTGACAAGAGCGATGTGTATAGCTTTGGTGTAATTCTTCTAGAACTCATATCTGGTCAAGAAGCAATATCAAATGAAAGTTTCGGGATTCATTGCCGAAACATAGTCCAATGGGCAAAATTGCACATTGAGAGTGGGGATATACAAGGCATCATTGATCCCTTACTAGGAAACAACTATGACCTACAATCAATGTGGAAAATAGCAGAGAAAGCATTGATGTGTGTTCAACCTCATGGAGATATGCGTCCATCGATCTCGGAAGTTTTAAAGGAGATCCAAGATGCAATATCTATTGAGAGAGAAGCTGAAACATCGCGAGAATGCAATTCTGATGAGGTTTCAAAAAATTCTTTTCATTCTTCCATGAACATAGGTTCAATGGATCTCGGTAGAGTTGAGAGTTTCCTTTCAATCGATGAATCGATTGCGCAACCTACTGCAAGATAG 2790 0.4029 MESSLLFFFLSFTTSLFLLPPFSSSQIMQGFVSLDCGGTESFTDEIGLDWTPDNKLTYGEIATISVANETRKQYTTLRYFPADSRKYCYTLDVISRTRYLLRATFLYGNFDKNNVYPKFDISVGATHWSTIVISDADSVEMRELIFLASSSTVSVCLSNATTGQPFLSTLELRQFNGSVYFTEFEKQFYLSVSARINFGAESDAPIRYPDDPFDRIWMSDSVKKANYLVDVAAGTEKISTNEPIFVNRDDIPPMKVMQTAVVGTNGSLTYRLNLDGFPGTAWAVTYFAEIEDLRPTESRKFRLMLPGQPEISKIIVNIEENAFGKYRLYEPGFVNLTLPFVLSFKFGKTTDSSKGPLLNAMEINKYLEKNNGSPDVEAISGVLSRYSSANWTQEGGDPCLPVSWSWIHCSSDPQPRIISILLSSKNLTGNIPSDITKLVGLVELWLDGNMLTGPIPDFTGCTDLKIIHLENNQFTGELPASLVNLPSLRELYVQNNMLSGAVPPELLSKNLVLNYSGNINLHKGSKTKSHIYIIIGSAVGASVLLLATVISCLVMHKGKKKYYEKDHIVSVPTQRPASWKSDDPAESAHCFSLAEIESATNNFEKRIGSGGFGIVYYGKLKEGKEIAVKVLRNNSYQGKREFSNEVTLLSRIHHRNLVQLLGYCREEDNSILVYEFMHNGTLKEHLYGPLVHGQSISWIKRLEIAEDSAKGIEYLHTGCVPVVIHRDLKSSNILLDTHMRAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNESFGIHCRNIVQWAKLHIESGDIQGIIDPLLGNNYDLQSMWKIAEKALMCVQPHGDMRPSISEVLKEIQDAISIEREAETSRECNSDEVSKNSFHSSMNIGSMDLGRVESFLSIDESIAQPTAR 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04240 929 Gene3D Ribonuclease Inhibitor 377 530 IPR032675 -
Vivi6g04240 929 FunFam Leucine-rich repeat receptor-like protein kinase 579 676 - -
Vivi6g04240 929 SMART serkin_6 601 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04240 929 ProSiteProfiles Protein kinase domain profile. 601 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04240 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Vivi6g04240 929 FunFam Leucine-rich repeat protein kinase family protein 376 528 - -
Vivi6g04240 929 Pfam Malectin-like domain 34 364 IPR024788 -
Vivi6g04240 929 SUPERFAMILY L domain-like 401 518 - -
Vivi6g04240 929 CDD STKc_IRAK 607 874 - -
Vivi6g04240 929 Gene3D Phosphorylase Kinase; domain 1 575 676 - -
Vivi6g04240 929 ProSitePatterns Protein kinases ATP-binding region signature. 607 629 IPR017441 GO:0005524
Vivi6g04240 929 PANTHER OS07G0107800 PROTEIN-RELATED 461 877 - -
Vivi6g04240 929 SUPERFAMILY Protein kinase-like (PK-like) 586 874 IPR011009 -
Vivi6g04240 929 Gene3D Transferase(Phosphotransferase) domain 1 677 901 - -
Vivi6g04240 929 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 677 886 - -
Vivi6g04240 929 Pfam Protein tyrosine and serine/threonine kinase 603 803 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04240 Vivi-Chr6 142023845 142028791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04240 23 711 Receptor kinase-like Gene Family AT2G37050 67.960 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vivi6g04240 Malectin_like 7.7e-78 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04240 - - vvo:131610279 1816.2