Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04239 ATGTCCGACGCTCCGGCGAGTCCTGGCGGTGGAAGCCACGAGAGCGGCGAGCACAGTCCCCGTTCTAACATCCGCGAGCAAGATAGGTTTCTTCCTATTGCCAACATCAGCCGCATCATGAAGAAAGCTCTCCCTGCTAATGGCAAAATCGCGAAAGATGCTAAAGAGACCGTTCAGGAATGCGTCTCTGAGTTCATCAGCTTCATTACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAGAGGAAGACTATTAACGGCGATGATTTGCTTTGGGCGATGGCGACGCTAGGGTTCGAGGATTATATTGATCCTCTTAAGATTTACCTCACGAGATACAGAGAGAATTATTTTGAAGTGTTATTGCTGTTGTGCTTTTTACTGATGGTAGTTTTTTTTCGTTGCTTGTCGTGGGTTGATTGGAAATGTTGCAGATGGAGGGTGATACTAAGGGCTCTGGCAAGGGTGGAGATTCGTCTGCTAAGAAAGATCTTCAACAAGGTTCTAATCCTCAGCTTGTTCATCAAGGTTCTTTCTCACAAGGTGTTTCTTACACAAATTCTCAGGGTCAACATATGA 579 0.4629 MSDAPASPGGGSHESGEHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYRENYFEVLLLLCFLLMVVFFRCLSWVDWKCCRWRVILRALARVEIRLLRKIFNKVLILSLFIKVLSHKVFLTQILRVNI 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04239 192 FunFam Nuclear transcription factor Y subunit B-3 19 121 - -
Vivi6g04239 192 SUPERFAMILY Histone-fold 27 116 IPR009072 GO:0046982
Vivi6g04239 192 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi6g04239 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Vivi6g04239 192 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vivi6g04239 192 Gene3D Histone, subunit A 17 119 IPR009072 GO:0046982
Vivi6g04239 192 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Vivi6g04239 192 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Vivi6g04239 192 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Vivi6g04239 192 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04239 Vivi-Chr6 142006021 142009997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04239 7 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 86.607 8.83e-67 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi6g04239 CBFD_NFYB_HMF 9.8e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04239 K08065 - cit:102624322 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04239 6 142006021 142009997 Vivi6g04239 6 142006021 142009997 ECH
Vivi6g04239 6 142006021 142009997 Vivi1g05269 1 115318260 115319373 PCT