Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04238 ATGTCCGACGCTCCGGCGAGTCCTGGCGGTGGAAGCCACGAGAGCGGCGAGCACAGTCCCCGTTCTAACATCCGCGAGCAAGATAGGTTTCTTCCTATTGCCAACATCAGCCGCATCATGAAGAAAGCTCTCCCTGCTAATGGCAAAATCGCGAAAGATGCTAAAGAGACCGTTCAGGAATGCGTCTCTGAGTTCATCAGCTTCATTACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAGAGGAAGACTATTAACGGCGATGATTTGCTTTGGGCGATGGCGACGCTAGGGTTCGAGGATTATATTGATCCTCTTAAGATTTACCTCACGAGATACAGAGAGATGGAGGGTGATACTAAGGGCTCTGGCAAGGGTGGAGATTCGTCTGCTAAGAAAGATCTTCAACAAGGTTCTAATCCTCAGCTTGTTCATCAAGGTTCTTTCTCACAAGGTGTTTCTTACACAAATTCTCAGGGTCAACATATGATGGTTCCTATGCAAGGCCCAGAGTAG 516 0.4864 MSDAPASPGGGSHESGEHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGSGKGGDSSAKKDLQQGSNPQLVHQGSFSQGVSYTNSQGQHMMVPMQGPE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04238 171 Gene3D Histone, subunit A 17 149 IPR009072 GO:0046982
Vivi6g04238 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 145 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi6g04238 171 SUPERFAMILY Histone-fold 27 130 IPR009072 GO:0046982
Vivi6g04238 171 MobiDBLite consensus disorder prediction 1 27 - -
Vivi6g04238 171 MobiDBLite consensus disorder prediction 118 171 - -
Vivi6g04238 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Vivi6g04238 171 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vivi6g04238 171 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Vivi6g04238 171 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Vivi6g04238 171 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Vivi6g04238 171 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Vivi6g04238 171 MobiDBLite consensus disorder prediction 130 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04238 Vivi-Chr6 142006021 142009999 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04238 7 169 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.647 3.95e-87 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi6g04238 CBFD_NFYB_HMF 7.6e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04238 K08065 - gmx:100798667 302.753