Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04227 ATGGCCGTTCCACTGCTAACCAAGAAGATCATCAAGAAGCGTGTCAAGAGGTTCATTAGGCCTCAAAGTGACAGGAGAATATGTGTCAAGGAAAGTTGGCGCAGGCCTAAGGGTATTGACTCACGTGTTAGGAGAAAGTTCAAAGGAGTTACTTTGATGCCAAACATTGGTTATGGTTCAGACAAGAAGACCCGCCATTATCTGCCTAACGGTTTCAAGAAGTTTGTTGTCCACAATGTCAAGGATCTAGAACTCCTCATGATGCATAACAGAACATACTGTGCTGAGATAGCACACAATGTGTCAACCAGGAAAAGAAAGGATATCGTTGAACGTGCAGCACAATTGGATGTTGTTGTCACAAACAAATTGGCCAGGTTGCGCAGCCAAGAGGACGAATAA 402 0.4403 MAVPLLTKKIIKKRVKRFIRPQSDRRICVKESWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKKTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNVSTRKRKDIVERAAQLDVVVTNKLARLRSQEDE 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04227 133 CDD Ribosomal_L32_L32e 18 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vivi6g04227 133 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 1 133 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vivi6g04227 133 Pfam Ribosomal protein L32 16 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vivi6g04227 133 SUPERFAMILY Ribosomal protein L32e 2 131 IPR036351 -
Vivi6g04227 133 SMART Ribosomal_L32e_2 15 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04227 Vivi-Chr6 141833712 141835710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04227 1 133 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 89.474 4.10e-89 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04227 K02912 - gmx:100306401 244.588