Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04218 ATGGGGAAAAAGGGAAATTGGTTTTCTACTGTGAAGAAAGCTCTCAGCCCTGACTCAAAGAAATCGAGTAAATCAAAGAAGAAATGGTTCGGGAAGCAAAAATTGCAGACTTCAGACCCTTCCGTAGAAGATACGACACCGCCTCTTCCTCCACCAGAAGATGTTAGATTAACTCATAATGAAAACCAAAACAATCACCATCATGTTGCTGAAATTACAACTGCTGTGGTTACTGAGGAACCCGGTCCTTCTGTTCCGGCACCAGTTGTTAGGACTCAAGCTTCTGTAGTTGCTCGTTTTGCTGGTAAACCAAAGGATGAAGTGGCGGCAATCAAGATTCAAACAGCTTTTCGTGGATACTTGGCACGAAGAGCGTTGCGGGCTTTAAGAGGGTTGGTCAGATTGAAAACACTGATGGAAGGGCCAATTGTAAAACGCCAAGCTATGAGTACCCTCCGTTCAATGCAGACGTTAGCTCGTCTGCAATCTCAAATTCGTTCCAGGAGGGTCAGAATGTTAGAGGAGAATCAGGCTTTGCAGAGACAGCTCTTACAGAAGCATGCAAGAGAGCTCGAGACCATGCGGATTGGAGAGGAATGGGATGATAGCCTACAATCAAAAGAACAAATTGAAGCCAAGTTAATGAGCAAGTACGAGGCTACTATGAGAAGGGAAAGAGCAATGGCTTATGCATTCACTCATCAGCAAAACGGGAAGAACTCATCTCGACCTATGAATCCAATGTTTGTGGATCCAACCAATCCTACGTGGGGCTGGAGCTGGCTTGAACGATGGATGGCTGCTCGACCTTGGGAGAGCCGTGGCCTTATGGATAAAGAACTGAATGACCATTCATCTGTTAAAAGTTCGAGCCGTGGCATTACAGGTGGAGAAATCAGCAAATCATTTGCCCGTTTCCAGCTGAATTCCGAAATACATTCTCCAGCAGCCAGCCAACACCCAGGCTCGCCTAGCTTTCAATCAAATTCAACAACTCCTAAGCCAGCTTCTGCATCAGTTGCAAGGAAACTGAAGAAGGCAAGTCCAAAGGGAAGCTGGGTTATGGAAGAAGACTCCAAAAGCATGGCCAGTGTACAGTCAGATCGATTTCGTAGGCACTCAATTGCTGGGTCGTCAGTTAGGGATGACGAGAGTCTTGCTAGCTCTCCATCAGTTCCAAGTTATATGATACCAACTCAATCTGCGAAAGCTAGGTCTAGGACACAAAGTCAGAGTCCATTAGCTAAAGAAAACGGCAAACAAGAGAAAGGGTCCTTCGGGACTGCAAAGAAGCGTCTTTCTTTCCCGGCTTCGCCCGCCAGGCCAAGGCGCCATTCAGGTCCGCCGAAGGTAGAAACCGCCATAAATGCAGAGGTCACTGTGGACAATGGTGTGGTCAGTTGA 1404 0.4694 MGKKGNWFSTVKKALSPDSKKSSKSKKKWFGKQKLQTSDPSVEDTTPPLPPPEDVRLTHNENQNNHHHVAEITTAVVTEEPGPSVPAPVVRTQASVVARFAGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLKTLMEGPIVKRQAMSTLRSMQTLARLQSQIRSRRVRMLEENQALQRQLLQKHARELETMRIGEEWDDSLQSKEQIEAKLMSKYEATMRRERAMAYAFTHQQNGKNSSRPMNPMFVDPTNPTWGWSWLERWMAARPWESRGLMDKELNDHSSVKSSSRGITGGEISKSFARFQLNSEIHSPAASQHPGSPSFQSNSTTPKPASASVARKLKKASPKGSWVMEEDSKSMASVQSDRFRRHSIAGSSVRDDESLASSPSVPSYMIPTQSAKARSRTQSQSPLAKENGKQEKGSFGTAKKRLSFPASPARPRRHSGPPKVETAINAEVTVDNGVVS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04218 467 PANTHER IQ-DOMAIN 5-RELATED 1 438 - -
Vivi6g04218 467 MobiDBLite consensus disorder prediction 314 337 - -
Vivi6g04218 467 MobiDBLite consensus disorder prediction 1 54 - -
Vivi6g04218 467 MobiDBLite consensus disorder prediction 381 418 - -
Vivi6g04218 467 Gene3D - 66 132 - -
Vivi6g04218 467 SMART iq_5 105 127 IPR000048 GO:0005515
Vivi6g04218 467 ProSiteProfiles IQ motif profile. 106 134 IPR000048 GO:0005515
Vivi6g04218 467 MobiDBLite consensus disorder prediction 314 467 - -
Vivi6g04218 467 Pfam IQ calmodulin-binding motif 109 127 IPR000048 GO:0005515
Vivi6g04218 467 Pfam Protein of unknown function (DUF4005) 382 443 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04218 Vivi-Chr6 141732867 141736318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04218 1 467 IQD Protein Family AT5G03040 52.058 2.99e-144 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04218 - - gmx:100800080 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04218 6 141732867 141736318 Vivi6g04218 6 141732867 141736318 ECH
Vivi6g04218 6 141732867 141736318 Vivi1g06899 1 163792658 163795438 PCT