Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04215 ATGTCCAACGACTCTTTGTTCGCCGGCATTCGTTTTGATAGAAAGAGATTCGGCGCCGACATTGCCAGGTTTCAGAAAAAAGATGCCGGTACCAGTTTGGCGAAGATTCAGAGCGTGACAGAAGATGAAGAAATCAAGGAAACAATAGAAGCCGCGTCTGCGAAGAAAAGGAAGCGCAAGAAAACCTCTTCTGAAGCAGTTGATGGATTCAGTGTGTTCCGAAGTTCAACATCGAAGTCAAATGATAAAGTCCAAGCCGATGATGATGAGTCCATTCGGTTGAAGAAAGAAAAAAATAAACAACTCGAGCGTGATGCTATCTTCAGGAAGAGCCATAACATTCATGTCTCCGGTTACAATGTGCCGTCCCCACTTCAAAGCTTTGATGAGTTGAAAACGAGTTATAAATGTCCGTCCTATTTATTGCGGAATCTGGCAGAACTTGGATTCAGAGAACCAACACCAATCCAACAGCAGGCTATTCCAGTACTCTTACAGGATCGTGAATGCTTTGCCTGTGCCCCAACTGGCTCTGGAAAAACCCTTGCATTTGTGTTTCCCATGCTCATGAAGCTCAAGGCTCATTCAAAAGATGGCGTTCGAGCTGTTATCATCTGTCATAGCCGTGAATTATCTGGTCAAACATACCGAGAATGCAAAAAGTTTGCCAAAGGGGAAAAGTTTCGTATCAAGTTAATGACAAAACATCTTTTAGAAGGTTCTGATTTTTCAAAATTTCCTTGTGACATACTTATATCCACGCCCTTTCGATTACGCTTGGCTACCCAGAGGAAAAAGCTTGATCTCAGCAGAGTTGAGTATCTTGTCCTTGATGAGTCTGATAAGCTATTTGAGCCTGGAATGTTCAAGCAGATTGATGCTATTATCAAAGCATGCACAAATCCCTCAATAGTACGCTCTCTGTTCAGTGCTACTTTACCTGATTTTATTGAAGATAAAGCTCGAGAACTTATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACAATTAAGCAGAAGTTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTATAGCAATTCGGCAGAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTGTCCAAAGCAAGGAGCGAGCCAAGGAGCTGCATGGTGAACTTGCATTCGAAGATATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCAGTTGACAACTTCAGAGCTTGTAAAACATGGGTTTTGATTGCCACTGATGTGGTTGCTCGAGGAATGGATTTCAAAGGCATTAACTGTGTGATCAATTATGATTTCCCAGATTCTGCATCTGCATATATCCACAGAATTGGTCGTACTGGTAGAGCAGGCAGGAGTGGCGAAGCGATTACATTTTACACAGAAGAGGATATTCCATTCTTGAAGAACGTAGCTAATCTAATGTCATCCTCAGGCTGTGAAGTTCCATCTTGGTTGACGGAGTTGCAGAAAAAGAAGTGGAGGAAGCACCGACCTAAAAGAGATTCTATCTCAACTAAACCTGACAAAGTTGCAAAAAAACAAAAAAAAGAAGTGGAGGAAGCATCGGCCCAAAAAGATTCTATCTCAACTAAACCGGATCTTTAA 1647 0.4177 MSNDSLFAGIRFDRKRFGADIARFQKKDAGTSLAKIQSVTEDEEIKETIEAASAKKRKRKKTSSEAVDGFSVFRSSTSKSNDKVQADDDESIRLKKEKNKQLERDAIFRKSHNIHVSGYNVPSPLQSFDELKTSYKCPSYLLRNLAELGFREPTPIQQQAIPVLLQDRECFACAPTGSGKTLAFVFPMLMKLKAHSKDGVRAVIICHSRELSGQTYRECKKFAKGEKFRIKLMTKHLLEGSDFSKFPCDILISTPFRLRLATQRKKLDLSRVEYLVLDESDKLFEPGMFKQIDAIIKACTNPSIVRSLFSATLPDFIEDKARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLIAIRQSFAESLNPPVLVFVQSKERAKELHGELAFEDIRVDVIHSDLSQEERENAVDNFRACKTWVLIATDVVARGMDFKGINCVINYDFPDSASAYIHRIGRTGRAGRSGEAITFYTEEDIPFLKNVANLMSSSGCEVPSWLTELQKKKWRKHRPKRDSISTKPDKVAKKQKKEVEEASAQKDSISTKPDL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04215 548 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 130 158 IPR014014 GO:0003724
Vivi6g04215 548 MobiDBLite consensus disorder prediction 515 548 - -
Vivi6g04215 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 476 IPR027417 -
Vivi6g04215 548 Gene3D - 339 546 IPR027417 -
Vivi6g04215 548 Gene3D - 105 338 IPR027417 -
Vivi6g04215 548 SMART helicmild6 383 464 IPR001650 -
Vivi6g04215 548 MobiDBLite consensus disorder prediction 504 548 - -
Vivi6g04215 548 Pfam Helicase conserved C-terminal domain 366 464 IPR001650 -
Vivi6g04215 548 Coils Coil 525 545 - -
Vivi6g04215 548 Pfam DEAD/DEAH box helicase 154 316 IPR011545 GO:0003676|GO:0005524
Vivi6g04215 548 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 503 IPR001650 -
Vivi6g04215 548 CDD SF2_C_DEAD 343 473 - -
Vivi6g04215 548 CDD DEADc_DDX52 141 334 IPR044764 GO:0003724|GO:0005524|GO:0030490
Vivi6g04215 548 SMART ultradead3 149 346 IPR014001 -
Vivi6g04215 548 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 55 534 - -
Vivi6g04215 548 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 331 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04215 Vivi-Chr6 141694732 141702198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04215 124 502 Eukaryotic Initiation Factors Gene Family AT3G19760 30.709 7.77e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04215 K14779 - gmx:100800969 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04215 6 141694732 141702198 Vivi6g04215 6 141694732 141702198 ECH