Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04210 ATGTCCGATAAAGTTCCCCCTTCCTTCGATCGCGCGAATGCTGGATCTCAAGGGTTCAACCCAGGCTTAATAGTTCTACTTGTTGTTGGAGGGTTGCTATTGACATTCCTCATTGGAAACTTTGTCCTCTACTCTTATGCACAGAAGACTATTCCTCCTAGGAAAAAGAAGCCAGTCTCAAAAAAGAAGATGAAAAAGGAGAGACTGAAGCAAGGTGTCTCTGCACCTGGAGAGTAG 237 0.4473 MSDKVPPSFDRANAGSQGFNPGLIVLLVVGGLLLTFLIGNFVLYSYAQKTIPPRKKKPVSKKKMKKERLKQGVSAPGE 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04210 78 Pfam DNA binding protein S1FA 15 78 IPR006779 GO:0003677|GO:0005634|GO:0006355
Vivi6g04210 78 MobiDBLite consensus disorder prediction 54 68 - -
Vivi6g04210 78 PANTHER DNA-BINDING PROTEIN S1FA2 12 78 IPR006779 GO:0003677|GO:0005634|GO:0006355
Vivi6g04210 78 MobiDBLite consensus disorder prediction 53 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04210 Vivi-Chr6 141625636 141627585 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF S1Fa-like Vivi6g04210 S1FA 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04210 - - gmx:100499820 121.324