Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04200 ATGGGGCATAGACACATATACAATGCATCATCTCCAATGTTTGAGGGCGAAGCTGACCAGAATTGGAATCACATGCACACTGATCAACATCATGTGAACCATGAGGGGACTAGCTCTTCAGAGAATGGTTCTTTTATTTATCCTGTGGAAAATATATCTATAGATAATATTTATTTCCCCTCTCATTGGAACTCCAACACAAGATCAAATGGATATGCATCCTCAGGCCCTAGCATTGAAGTGCCTCCTCCTCCTCCACCACCTCTTCCTCAGCAATTGGACACACCAGGCACTTCTAACGATCATTTTATGCATACATCTAATGCTGGACCTTTCTTTGCAGTATCTGAAAATTATGTACACCCGCCTCCGTCTTCTTCCAGTTATGACAGACATGCATTTCATGTTGATAGTGGTTTTATTGATCTTACAATGGGAAGTGCACGGGGGCATCACAAGAGGAAGAGCCCTGGAATTCCTTCAGTTTACGAGAGAGGCAGTTCAAGTGGATATTTTAATGCTGGGAGCTCAAGCGATCTCCCTACACCTCCAGAATCATGGCCAGAGAAACCAAATATGAATTCTCAATATATGCCCTGGGATCATGTTGCCATGACACCCACATTCAGAGGTGCTGGCCTCTCAATGAAGGGTGAAAGTTCTGTACGTAATGTAAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGTCTAGGACCCATTTACCAGTTAACCATTCACTCAACTCGTACCTTACTGCCTCACCATTCGGCCATTGTAGCTTGGCGGATCTTTCAGCTCAGGTTACTACCCCTGTGACAAGGGATTGGAGCCAAATGAATGTAACTCCTGCTAATGGAAGAGTGTTATTACCAGATGCTAGTACTTCTGGTCTCGAGACAAGTCACTTCCCTGTTGGAAATACTGCTGCTGCTGCTAGTAATGCTCTTGTAGATGTTGGAAGCTTCCATCATGAATTTGGTACCAGCAGAAATCCTACTACTGCTCAAAGTTTTCAAAATTTGACTCAAACTGCTAGGGGAACTCGAAGTAATTACTCTCAGAGATCCACTCCAGCTTTCAGGGCTTCTTCAAACTTGCGCTTGGGACATGCGGCGCCTTCAGATAATGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCGTTGACCACTGTTGGCTGGCGGAACAGTGACAGAAATGGAAGGTCTAGAATTTCAAGTGAAAGATATAGATCATTGGCCGATGAGGCTGGTCTCCATGCTAGATTTTCCTCTGAGGTACCGGGTTTCATGATGGGTGAGCGTGCTTCACTTTATGGCTCTAGGAATATACTTGATCAGCACAGAGACATGAGAATGGACGTAGATAACATGAGCTACGAGGAACTTCTTGCACTCGGGGAGAGGATAGGCCAGGTGAACACAGGATTGTCTGAGGATGTGCTTTCCAAGTGTTTGACAGAAACAATATATTGTTCATCTGACCAATGCCAGGATGAAGGAAGCTGTGTGATCTGTCTGGAAGAGTACAAGAATATGGACGATGTTGGGACACTTAAAACTTGTGGTCATGACTATCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAACTATGTCCTATCTGCAAATCTTCTGTTTTGCCTGAGGATAAGAAGAATAAATAA 1686 0.4401 MGHRHIYNASSPMFEGEADQNWNHMHTDQHHVNHEGTSSSENGSFIYPVENISIDNIYFPSHWNSNTRSNGYASSGPSIEVPPPPPPPLPQQLDTPGTSNDHFMHTSNAGPFFAVSENYVHPPPSSSSYDRHAFHVDSGFIDLTMGSARGHHKRKSPGIPSVYERGSSSGYFNAGSSSDLPTPPESWPEKPNMNSQYMPWDHVAMTPTFRGAGLSMKGESSVRNVRSRSALDLESNLSRTHLPVNHSLNSYLTASPFGHCSLADLSAQVTTPVTRDWSQMNVTPANGRVLLPDASTSGLETSHFPVGNTAAAASNALVDVGSFHHEFGTSRNPTTAQSFQNLTQTARGTRSNYSQRSTPAFRASSNLRLGHAAPSDNGLPMVAESYSSRHPRPLTTVGWRNSDRNGRSRISSERYRSLADEAGLHARFSSEVPGFMMGERASLYGSRNILDQHRDMRMDVDNMSYEELLALGERIGQVNTGLSEDVLSKCLTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSVLPEDKKNK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04200 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 473 555 IPR013083 -
Vivi6g04200 561 MobiDBLite consensus disorder prediction 162 193 - -
Vivi6g04200 561 MobiDBLite consensus disorder prediction 386 406 - -
Vivi6g04200 561 MobiDBLite consensus disorder prediction 147 194 - -
Vivi6g04200 561 SMART ring_2 508 549 IPR001841 -
Vivi6g04200 561 MobiDBLite consensus disorder prediction 69 107 - -
Vivi6g04200 561 MobiDBLite consensus disorder prediction 389 405 - -
Vivi6g04200 561 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 473 554 - -
Vivi6g04200 561 Pfam Ring finger domain 507 550 IPR001841 -
Vivi6g04200 561 CDD RING-H2_RNF24-like 508 553 - -
Vivi6g04200 561 MobiDBLite consensus disorder prediction 78 93 - -
Vivi6g04200 561 ProSiteProfiles Zinc finger RING-type profile. 508 550 IPR001841 -
Vivi6g04200 561 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 109 554 IPR045191 GO:0061630
Vivi6g04200 561 SUPERFAMILY RING/U-box 499 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04200 Vivi-Chr6 141597636 141605414 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04200 1 560 C3H Transcription Factor Family AT2G37150 41.343 1.34e-106 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04200 - - tpra:123892936 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04200 6 141597636 141605414 Vivi6g04200 6 141597636 141605414 ECH