Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04199 ATGGGGCATAGACACATATACAATGCATCATCTCCAATGTTTGAGGGCGAAGCTGACCAGAATTGGAATCACATGCACACTGATCAACATCATGTGAACCATGAGGGGACTAGCTCTTCAGAGAATGGTTCTTTTATTTATCCTGTGGAAAATATATCTATAGATAATATTTATTTCCCCTCTCATTGGAACTCCAACACAAGATCAAATGGATATGCATCCTCAGGCCCTAGCATTGAAGTGCCTCCTCCTCCTCCACCACCTCTTCCTCAGCAATTGGACACACCAGGCACTTCTAACGATCATTTTATGCATACATCTAATGCTGGACCTTTCTTTGCAGTATCTGAAAATTATGTACACCCGCCTCCGTCTTCTTCCAGTTATGACAGACATGCATTTCATGTTGATAGTGGTTTTATTGATCTTACAATGGGAAGTGCACGGGGGCATCACAAGAGGAAGAGCCCTGGAATTCCTTCAGTTTACGAGAGAGGCAGTTCAAGTGGATATTTTAATGCTGGGAGCTCAAGCGATCTCCCTACACCTCCAGAATCATGGCCAGAGAAACCAAATATGAATTCTCAATATATGCCCTGGGATCATGTTGCCATGACACCCACATTCAGAGGTGCTGGCCTCTCAATGAAGGGTGAAAGTTCTGTACGTAATGTAAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGTCTAGGACCCATTTACCAGTTAACCATTCACTCAACTCGTACCTTACTGCCTCACCATTCGGCCATTGTAGCTTGGCGGATCTTTCAGCTCAGGTTACTACCCCTGTGACAAGGGATTGGAGCCAAATGAATGTAACTCCTGCTAATGGAAGAGTGTTATTACCAGATGCTAGTACTTCTGGTCTCGAGACAAGTCACTTCCCTGTTGGAAATACTGCTGCTGCTGCTAGTAATGCTCTTGTAGATGTTGGAAGCTTCCATCATGAATTTGGTACCAGCAGAAATCCTACTACTGCTCAAAGTTTTCAAAATTTGACTCAAACTGCTAGGGGAACTCGAAGTAATTACTCTCAGAGATCCACTCCAGCTTTCAGGGCTTCTTCAAACTTGCGCTTGGGACATGCGGCGCCTTCAGATAATGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCGTTGACCACTGTTGGCTGGCGGAACAGTGACAGAAATGGAAGGTCTAGAATTTCAAGTGAAAGATATAGATCATTGGCCGATGAGGCTGGTCTCCATGCTAGATTTTCCTCTGAGGGTTTCATGATGGGTGAGCGTGCTTCACTTTATGGCTCTAGGAATATACTTGATCAGCACAGAGACATGAGAATGGACGTAGATAACATGAGCTACGAGGAACTTCTTGCACTCGGGGAGAGGATAGGCCAGGTGAACACAGGATTGTCTGAGGATGTGCTTTCCAAGTGTTTGACAGAAACAATATATTGTTCATCTGACCAATGCCAGGATGAAGGAAGCTGTGTGATCTGTCTGGAAGAGTACAAGAATATGGACGATGTTGGGACACTTAAAACTTGTGGTCATGACTATCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAACTATGTCCTATCTGCAAATCTTCTGTTTTGCCTGAGGATAAGAAGAATAAATAA 1680 0.4393 MGHRHIYNASSPMFEGEADQNWNHMHTDQHHVNHEGTSSSENGSFIYPVENISIDNIYFPSHWNSNTRSNGYASSGPSIEVPPPPPPPLPQQLDTPGTSNDHFMHTSNAGPFFAVSENYVHPPPSSSSYDRHAFHVDSGFIDLTMGSARGHHKRKSPGIPSVYERGSSSGYFNAGSSSDLPTPPESWPEKPNMNSQYMPWDHVAMTPTFRGAGLSMKGESSVRNVRSRSALDLESNLSRTHLPVNHSLNSYLTASPFGHCSLADLSAQVTTPVTRDWSQMNVTPANGRVLLPDASTSGLETSHFPVGNTAAAASNALVDVGSFHHEFGTSRNPTTAQSFQNLTQTARGTRSNYSQRSTPAFRASSNLRLGHAAPSDNGLPMVAESYSSRHPRPLTTVGWRNSDRNGRSRISSERYRSLADEAGLHARFSSEGFMMGERASLYGSRNILDQHRDMRMDVDNMSYEELLALGERIGQVNTGLSEDVLSKCLTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSVLPEDKKNK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04199 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 553 IPR013083 -
Vivi6g04199 559 Pfam Ring finger domain 505 548 IPR001841 -
Vivi6g04199 559 ProSiteProfiles Zinc finger RING-type profile. 506 548 IPR001841 -
Vivi6g04199 559 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 107 552 IPR045191 GO:0061630
Vivi6g04199 559 MobiDBLite consensus disorder prediction 162 193 - -
Vivi6g04199 559 CDD RING-H2_RNF24-like 506 551 - -
Vivi6g04199 559 MobiDBLite consensus disorder prediction 78 93 - -
Vivi6g04199 559 SMART ring_2 506 547 IPR001841 -
Vivi6g04199 559 SUPERFAMILY RING/U-box 497 553 - -
Vivi6g04199 559 MobiDBLite consensus disorder prediction 147 194 - -
Vivi6g04199 559 MobiDBLite consensus disorder prediction 69 107 - -
Vivi6g04199 559 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 471 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04199 Vivi-Chr6 141597635 141605414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04199 1 558 C3H Transcription Factor Family AT2G37150 41.489 1.19e-108 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04199 - - tpra:123892936 985.326