Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04198 ATGGACAAAAATCCTCATTCAGAAATTCAACTCCCTCCGGGATTTAGATTCCACCCTTCTGATGAAGAGCTAGTAGTTCACTATCTAAGAAACAAAGTGACTTCATCTCCTCTTCCTGCTTCATTCATAGCAGAAATAGATCTCTACAAGTACAATCCATGGGAGCTTCCAAATAAGGCTTTGTTTGGTGAAGAAGAGTGGTATTTCTTTACTCCGAGGGAGAGAAAATATCCGAAAGGATTGAGGCCTAATAGAGCAGCTGGTGTGGGTTATTGGAAAGCTACTGGAACTGATAAACCGATTCTGACTTCATGTGGTTTGAAAAGCATTGGAGTGAAGAAAGCTCTTGTGTTCTATAAGGGACGTCCACCGAAAGGATCTAAAACCGAGTGGATCATGCATGAATATAGGCTGCATGATTCAGTGATCTCAAATTCCAAGCATAACGGTTCTACTTCTATGCGACTGGACGAATGGGTGTTATGCCGAGTTCGACAAAAAACCGGAAGCCCGAGAAGGGGTTTGGAAGATTCAAATGAACTTAGTTATTATGAACCAACAAGTCAATTTCAGCAAATGAATGAGAACTCAAATCCTGAACCAGTCAAAAACTATGTGCAGAATGAATATCCAATGTTACCTTATATTCTGGCTTCTAAGACTGTTCTTCCCAATACCATTGGTATGTCATCAGACAATGTAAAACCACATGCTTCATTTTATGAAGAAAGCAGCTTAAACATAATAGGAGCCCAGTTCTTATCATCTGCAACTGAGGGATTGTTTGATAATCCTCTGAAGAGAAAAGCGGTTGAAAATAATAGCGAGACGGACTTTTATGCTGTCCTCAATCAAAACCTAAGCAGAGAAGTTGAAAAAGATTTAAGCAAAGGGTACAATTTCTGCAACTTTGATCAGTGGAGTTCAATCATACAACCTCAAGAGCTTAATAGCTTAGCCTTCACTGGATATACATGA 978 0.3957 MDKNPHSEIQLPPGFRFHPSDEELVVHYLRNKVTSSPLPASFIAEIDLYKYNPWELPNKALFGEEEWYFFTPRERKYPKGLRPNRAAGVGYWKATGTDKPILTSCGLKSIGVKKALVFYKGRPPKGSKTEWIMHEYRLHDSVISNSKHNGSTSMRLDEWVLCRVRQKTGSPRRGLEDSNELSYYEPTSQFQQMNENSNPEPVKNYVQNEYPMLPYILASKTVLPNTIGMSSDNVKPHASFYEESSLNIIGAQFLSSATEGLFDNPLKRKAVENNSETDFYAVLNQNLSREVEKDLSKGYNFCNFDQWSSIIQPQELNSLAFTGYT 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04198 325 FunFam NAC domain-containing protein 72-like 20 172 - -
Vivi6g04198 325 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Vivi6g04198 325 Gene3D NAC domain 20 170 IPR036093 GO:0003677|GO:0006355
Vivi6g04198 325 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 242 - -
Vivi6g04198 325 SUPERFAMILY NAC domain 8 167 IPR036093 GO:0003677|GO:0006355
Vivi6g04198 325 ProSiteProfiles NAC domain profile. 11 167 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04198 Vivi-Chr6 141563285 141564960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04198 7 172 NAC Transcription Factor Family AT1G69490 67.470 3.87e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi6g04198 NAM 1.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04198 - - cam:101491216 548.51