Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04195 ATGAATATTCTCAGTGACCCTTTTTCACTCTCCTCTTCCCATGGAGCTTTTGAAAACATCCAAAACACAAATGCAAACCCTAACCCTAATCCTTTACCACAAGCCAACAAGAAGAAAAGAAATCTACCAGGAACACCAGATCCAGATGCAGAAGTCATTGCTCTTTCTCCCAAGACTCTAATGGCGACGAACCGATTCGTCTGCGAAATATGCAACAAAGGTTTCCAAAGAGATCAGAATCTTCAGCTTCATAGAAGAGGTCACAATCTACCATGGAAGCTAAAGCAAAGGTCCAACAAAGAACCAAGGAAAAAGGTTTACATCTGCCCGGAGGAAACTTGCGTCCACCACGACGCGGCTAGGGCGCTCGGGGACTTGACCGGAATAAAGAAACATTTTAGCAGAAAACATGGAGAGAAGAAATGGAAGTGTGAGAAATGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATGCCAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACCCTCTTCTCTAGGAAGGATAGTTTTATTACACATAGAGCTTTCTGTGATGCTTTAGCAGAAGAGAGTGCAAGACACACCTCACCACTCACTCCTACAACTCTAAGTTTCAAGAATGAAGAGTCAAATTTGATGAACACACAAACTAGTCTGTCACATGGATTCATATCACGTCAAAATCTAGCTGGTTTTCCACATGAAGGGTTTCATGATCAGCAAAAGCCAAGTTTATCACTGTGGTTGAATCATGAAAATCAACAGAATATTAATCATCATCCATATAATTCAGTTGATCATGTTTCATCTGGTTTTTGTGATATCATGCAAATGGCACAGACTAGTACTACTCCAATGTCAGCTACTGCACTTCTTCAGAAAGCAGCTCAAATAGGTTCAACAAGAAGCACTACTACTAATAATAATCCATCTATTTTCAGTGGAAGTTTTGGTGTAACGAGTTCATCAAACCATGACGAGATTGATAACATGGTGATTAATCAGAATATGAAGCAGCATGGGAATTTTAATCCAAGTACTACTAGCAGTGCAATGGTTGGTAATAATTCTAGTGGATTTAGAGATTTTCTTGGAGTGAGTAGTAATCATCCATTTCTACCTCAAGAGTTTGCGAAGTTTGCTTCAACAATAAGCTCATCGATGATGAGTTTGAATCAATTCAATGAAGGCTGA 1212 0.3944 MNILSDPFSLSSSHGAFENIQNTNANPNPNPLPQANKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEETCVHHDAARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARHTSPLTPTTLSFKNEESNLMNTQTSLSHGFISRQNLAGFPHEGFHDQQKPSLSLWLNHENQQNINHHPYNSVDHVSSGFCDIMQMAQTSTTPMSATALLQKAAQIGSTRSTTTNNNPSIFSGSFGVTSSSNHDEIDNMVINQNMKQHGNFNPSTTSSAMVGNNSSGFRDFLGVSSNHPFLPQEFAKFASTISSSMMSLNQFNEG 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04195 403 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vivi6g04195 403 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Vivi6g04195 403 FunFam protein indeterminate-domain 12-like 45 113 - -
Vivi6g04195 403 Pfam Zinc finger, C2H2 type 66 88 IPR013087 -
Vivi6g04195 403 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Vivi6g04195 403 MobiDBLite consensus disorder prediction 14 49 - -
Vivi6g04195 403 SMART c2h2final6 107 137 IPR013087 -
Vivi6g04195 403 SMART c2h2final6 142 162 IPR013087 -
Vivi6g04195 403 SMART c2h2final6 66 88 IPR013087 -
Vivi6g04195 403 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 384 IPR031140 -
Vivi6g04195 403 MobiDBLite consensus disorder prediction 14 35 - -
Vivi6g04195 403 Gene3D Classic Zinc Finger 62 89 - -
Vivi6g04195 403 Gene3D Classic Zinc Finger 99 190 - -
Vivi6g04195 403 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04195 Vivi-Chr6 141536217 141537969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04195 290 387 IDZ Gene Family AT5G03150 40.000 5.55e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g04195 zf-C2H2 0.0039 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04195 K25870 - tpra:123892932 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04195 6 141536217 141537969 Vivi6g04195 6 141536217 141537969 ECH
Vivi6g04195 6 141536217 141537969 Vivi1g06924 1 164488627 164491203 PCT