Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04194 ATGCTTAATTTTATGGGATTGTTCCACACATTTTTCGTTTGCCAATTCATCATTCTTCAACCCTTTGTTTCTGCTTCAGGAAATGCTGCTGAGTTTTTTGAGAAAGCATCTCAGAGTATAAAAGGGAGGCATTATACTGAGGCACTTAATGATCTAAATTCTGCAATTGAAGCAGATCCAAACCTTTCAGAAGCATACCTTTCCCGTGCTTCAGTTCTTCGCCAGTTATGCAGATATGAGCAATCTGAAAGGAGCTACAAAAAGTTTCTGGAGTTAAAACCCGGACATTCAGTGGCAGAAAAGGAGCTCTCTCAGCTATTGCAGGCTCAAAGTGCGCTAGAAACCGCTCAGTCCCTCTACGAGTCAGGCAACTTCACAAAATCTTTGGAATACATTGAGAAAGTTGTTCTTGTTTTCTCTCCAGCATGCACTAAGGCTAAGCTTCTTAAGGTGAGGTTGTTGATAGCTGATAAAGAGTATGAAGGTGCCATTGCTGAGTCTGGTTTTCTTCTCAAGGAAGATGAAAATAATTTGGAGGCGTTGTTGTTACGTGGTCGTGGATATTACTATTTAGCTGACCATGATGTTGCCACAAGGCATTATCAGAAAGGTCTTCGCCTAGATCCCGAGCATAGCGAACTGAAAAAAGCATACTTTGGGTTGAAAAATCTACTCAAAAAGAGTAAAAGTGCTGAAGATAATGCGAGTAAGGGCAAGCTACGAGTGGCAGTAGAGGAATTCAAGAGTGCGCTTGCTGTTGATCCTGACCATCGTGCACATAATGTAAATCTTCACCTTGGTTTATGTAAAGTGCTAGTCAGGCTTGGCAGAGGAAAAGACGCCTTGAACAGTTGTAGTGAAGCTCTTAATATCGATGAGGAGCTTATTGACGCTCTTGTTCAGAGGGGGGAAGCTAAACTCTTGACGGAGGACTGGGAGGGAGCTGTGGAAGATCTGAAATCAGCTGCTCAAAAATCTCCTCAGGATATGAATATCCGTGAAGTATTAATGAGGGCTGAGAAAGCCTTAAAGATAAGCAAACGCAAGGATTACTACAAAATTTTGGGAATTTCAAAACATGCTTCCGCTGCTGACATTAAACGGGCATACAAGAAACTTGCCTTACAATGGCATCCAGATAAGAATGTTGACAACAGAGAAGAAGCAGAGGCTAAATTCCGAGAGATCGCTTCTGCATACGAGGTTCTAAGTGACGAAGACAAGCGCACAAGATACGACAGCGGGGAGGACCTTGAAGATTCAGGAATGGGAGGCGGAGGCGGTGGAGGTTTCAATCCCTTCGGTGGTGGTGGACAGCAATTTCACTTTACTTTTGACGGCGGCTTCCCTGGTGGAGGATTTCCCGGCGGCGGCGGCGGTTATGAATTTCATTTTTGA 1398 0.4378 MLNFMGLFHTFFVCQFIILQPFVSASGNAAEFFEKASQSIKGRHYTEALNDLNSAIEADPNLSEAYLSRASVLRQLCRYEQSERSYKKFLELKPGHSVAEKELSQLLQAQSALETAQSLYESGNFTKSLEYIEKVVLVFSPACTKAKLLKVRLLIADKEYEGAIAESGFLLKEDENNLEALLLRGRGYYYLADHDVATRHYQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVAVEEFKSALAVDPDHRAHNVNLHLGLCKVLVRLGRGKDALNSCSEALNIDEELIDALVQRGEAKLLTEDWEGAVEDLKSAAQKSPQDMNIREVLMRAEKALKISKRKDYYKILGISKHASAADIKRAYKKLALQWHPDKNVDNREEAEAKFREIASAYEVLSDEDKRTRYDSGEDLEDSGMGGGGGGGFNPFGGGGQQFHFTFDGGFPGGGFPGGGGGYEFHF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04194 465 FunFam DnaJ domain containing protein 21 347 - -
Vivi6g04194 465 Gene3D DnaJ domain 348 456 IPR036869 -
Vivi6g04194 465 CDD DnaJ 350 405 IPR001623 -
Vivi6g04194 465 PRINTS DnaJ domain signature 370 385 IPR001623 -
Vivi6g04194 465 PRINTS DnaJ domain signature 408 427 IPR001623 -
Vivi6g04194 465 PRINTS DnaJ domain signature 352 370 IPR001623 -
Vivi6g04194 465 PRINTS DnaJ domain signature 388 408 IPR001623 -
Vivi6g04194 465 Pfam Tetratricopeptide repeat 238 305 - -
Vivi6g04194 465 SUPERFAMILY Chaperone J-domain 344 452 IPR036869 -
Vivi6g04194 465 SUPERFAMILY TPR-like 43 332 IPR011990 GO:0005515
Vivi6g04194 465 ProSiteProfiles dnaJ domain profile. 350 416 IPR001623 -
Vivi6g04194 465 ProSitePatterns Nt-dnaJ domain signature. 393 412 IPR018253 -
Vivi6g04194 465 SMART tpr_5 109 142 IPR019734 GO:0005515
Vivi6g04194 465 SMART tpr_5 29 62 IPR019734 GO:0005515
Vivi6g04194 465 SMART tpr_5 178 211 IPR019734 GO:0005515
Vivi6g04194 465 SMART tpr_5 296 329 IPR019734 GO:0005515
Vivi6g04194 465 SMART tpr_5 262 295 IPR019734 GO:0005515
Vivi6g04194 465 SMART tpr_5 63 96 IPR019734 GO:0005515
Vivi6g04194 465 Coils Coil 386 406 - -
Vivi6g04194 465 Pfam DnaJ domain 350 413 IPR001623 -
Vivi6g04194 465 FunFam DnaJ subfamily C member 7 348 457 - -
Vivi6g04194 465 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Vivi6g04194 465 Pfam Tetratricopeptide repeat 43 96 - -
Vivi6g04194 465 Gene3D Tetratricopeptide repeat domain 25 347 IPR011990 GO:0005515
Vivi6g04194 465 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 9 465 IPR044620 -
Vivi6g04194 465 ProSiteProfiles TPR repeat profile. 178 211 IPR019734 GO:0005515
Vivi6g04194 465 MobiDBLite consensus disorder prediction 407 431 - -
Vivi6g04194 465 SMART dnaj_3 349 408 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04194 Vivi-Chr6 141409499 141413759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04194 346 414 C2H2 Transcription Factor Family AT1G74250 46.575 1.99e-11 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04194 6 141409499 141413759 Vivi6g04194 6 141409499 141413759 ECH