Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04190 ATGGGAAACATCTCTAGCAACGGTTCCAACAACCGTCGCCGCCACGGTCCCGCTTCCCGGAGAACTCACCCGCCGCCACCACCTCCGGTAACACCTCAACCCGAAATTGCCACGCATCAATTTATCTATCCCGGTGCCCCGCCGTACCCGAACCCGAACCCTCCTATGCATTATCCTCAGTATCATTATCCTGGCTATTATCCACCACAGCCGGTACCTATGCCTCATCATCATCAACAGCATCCTCAACATCCTCATCATCATCAGCAACAGCATCCTCATCCGCATATGGACCCTGATTGGGCTTCCCGGTATTACCCTTGTGGACCGGTGATGAATCAGCCTGCTCCGTTTGTTGAGCATCAGAAAGCTGTTACTATAAGGAATGATGTTAATATTAAGAAGGAGACTCTTTCGATTTCGCCCGATGAGGAAAACGCTGGGTTCTTCCTCGTTTCTTTTACATTTGATGCCACCATTTCTGGGAGCATCACCATATTTTTCTTTGCCAAAGAAGATGAAGGCTGCATCCTCACACCGACCAAGGAAAACCTTCTTGCACCTGTAACTATACAATTCCAGCAAGGTCTTGGACAGAAGTTTAGACAGCAAGCTGGAACTGGTATTAACTTTTCAACGTTTGAGGAGTCAGATTTATTGAAGGTGGGTGACATGGATGTATACCCTTTGGCAGTGAAGGCAGAGGCATCCTCTAATAATCACGATGAATCAAATGAAACTGTGGCAACTGGCAACACAAACTCTCAGATAACTCAAGCGGTGTTCGAAAAGGAAAAAGGAGAATTCCGGGTAAAAGTTGTTAAGCAGATCTTGTCGGTGAATGGAATGCGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGGCGTGGATGACAACGACCAAGGAAAAGAGTGCGTGATCTGCTTGTCGGAGCCTCGTGACACAATTGTTCATCCCTGCCGACATATGTGCATGTGCAGCGGATGTGCGAAGGTTTTGAGGTTCCAGACAAATAGATGCCCGATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGACTGAGGAGTAA 1095 0.474 MGNISSNGSNNRRRHGPASRRTHPPPPPPVTPQPEIATHQFIYPGAPPYPNPNPPMHYPQYHYPGYYPPQPVPMPHHHQQHPQHPHHHQQQHPHPHMDPDWASRYYPCGPVMNQPAPFVEHQKAVTIRNDVNIKKETLSISPDEENAGFFLVSFTFDATISGSITIFFFAKEDEGCILTPTKENLLAPVTIQFQQGLGQKFRQQAGTGINFSTFEESDLLKVGDMDVYPLAVKAEASSNNHDESNETVATGNTNSQITQAVFEKEKGEFRVKVVKQILSVNGMRYELQEIYGIGNSVESGVDDNDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGTEE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04190 364 SMART ring_2 310 348 IPR001841 -
Vivi6g04190 364 MobiDBLite consensus disorder prediction 67 99 - -
Vivi6g04190 364 MobiDBLite consensus disorder prediction 1 36 - -
Vivi6g04190 364 Pfam Zinc finger, C3HC4 type (RING finger) 308 354 - -
Vivi6g04190 364 ProSiteProfiles Zinc finger RING-type profile. 310 349 IPR001841 -
Vivi6g04190 364 FunFam probable E3 ubiquitin-protein ligase LOG2 294 359 - -
Vivi6g04190 364 PANTHER MAHOGUNIN 1 359 IPR045194 GO:0061630
Vivi6g04190 364 SUPERFAMILY RING/U-box 309 354 - -
Vivi6g04190 364 CDD mRING-HC-C3HC5_MGRN1-like 308 349 IPR045195 -
Vivi6g04190 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 359 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04190 Vivi-Chr6 141336468 141341263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04190 101 329 C3H Transcription Factor Family AT3G09770 61.345 1.46e-96 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04190 - - aprc:113862864 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04190 6 141336468 141341263 Vivi6g04190 6 141336468 141341263 ECH
Vivi6g04190 6 141336468 141341263 Vivi1g06929 1 164864830 164868132 PCT