Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04188 ATGGCAAAATACCCTGAAACAGAACCTCAAGGTGGTTTACCAAACAAAGACTACCAAGATCCACCACCGGCACCACTCTTCGACACCGCCGAACTCGGCCAATGGTCCTTCTACAGAGCCCTCATCGCCGAATTCATCGCCACCCTCCTCTTCCTCTACGTCACCATTTTAACCGTCATTGGCTACAAATCCCAAACCGATCCTGCTCATAACGGTACCGACTGTGACGGAGTTGGCCTCCTCGGTATCGCTTGGGCCTTCGGTGGCATGATCTTTGTCCTCGTCTATTGCACCGCCGGCATATCAGGAGGACACATAAATCCGGCGGTCACGTTTGGGTTATTTCTGGCGAGGAAGGTGTCGTTGATTAGAGCAATACTATACATGGTGGCTCAATGTTTAGGAGCAATATGTGGTGTTGGACTAGTAAAAGCTTTTCAGAAAAGTTACTATAATAGATACAAAGGTGGTGCAAACATGTTAAACGATGGTTACAGTAAAGGAACTGGTTTAGGTGCTGAAATAATTGGAACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACCGATCCAAAGAGAAGTGCCAGAGACTCTCATGTTCCCGTTTTGGCACCACTTCCAATTGGTTTTGCTGTGTTTATGGTTCACCTTGCTACGATTCCTATCACTGGAACTGGGATCAACCCTGCTAGAAGCTTTGGAGCTGCTGTTATTTACAACAATGAGAAGGCTTGGGATGACCAATGGATCTTCTGGGTTGGGCCCTTTATTGGTGCTGCCATTGCTGCAATCTACCACCAGTTTGTGTTAAGAGCTCAAGCAGCAAAGGCTTTGGGTTCTTTCAGGAGCTCTTCAAATCTATAA 864 0.4676 MAKYPETEPQGGLPNKDYQDPPPAPLFDTAELGQWSFYRALIAEFIATLLFLYVTILTVIGYKSQTDPAHNGTDCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGVGLVKAFQKSYYNRYKGGANMLNDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFIGAAIAAIYHQFVLRAQAAKALGSFRSSSNL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04188 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g04188 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Vivi6g04188 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Vivi6g04188 287 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g04188 287 SUPERFAMILY Aquaporin-like 32 271 IPR023271 -
Vivi6g04188 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 14 281 IPR034294 -
Vivi6g04188 287 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g04188 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g04188 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g04188 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g04188 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g04188 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g04188 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g04188 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04188 Vivi-Chr6 141295694 141297034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04188 1 287 Major Intrinsic Protein MIP AT3G53420 81.533 1.78e-174 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04188 K09872 - mof:131165648 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04188 6 141295694 141297034 Vivi1g04745 1 101781844 101784568 ECH
Vivi6g04188 6 141295694 141297034 Vivi6g04188 6 141295694 141297034 ECH
Vivi6g04188 6 141295694 141297034 Vivi2g07161 2 214573528 214575518 ECH