Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04185 ATGGTTCAAATTCCACAAGTTAACTCTAACGTCTTCTACTTCCCTCAAGGTCATGCTGAGCATGCATATCAACCTGTCCATTTTCCTGCTGACTTCAAAATTCCATCCAAAATTCCATGTAGAGTTGCGGCTATCCATTATAGGGCTGATCCTGCCACTGATGAAGTGTATGCAAAACTCAGGCTTGTTCCTCTGCATATTAGCAAAGTTAGTATTGATGATGACGATGTTGTTGGCAACGATAATATGTCTGAAACTAAAAACAAATATCAATCTCATACGAAAACCTTGACACAATCAGATGCAAACAATGGTGGTGGATTCTCTTGTCCTAAGAATTGTGCCGAAACACTTTTTCCACCATTAGACTATTCAGGTCAGCTTCTTTCTCAGGACATTTTTCTCATGGATGCGCATGGAGAAACGTGGAGATTCAGACATGTTTATAGTGGTATGCCGAAGCGCCATTTGTTAACAACTGGGTGGAGTGACTTTGTAACTGACAAGCTACTTGTTTCAGGGGATTCACTTGTGTTTGTGAAAGCTGAAAACAGTGATCTTCATATTGGAATTCGAAGGTCTAAAAAACGAAATGACTGTAGATTTAACTTTCCATCAAAAAGGAAATCTGGTAGTGAAACTGGAATTCGTCTTCGGCCACCATCATACGGAGGGAAAGTGAAGGCTGAAGATGTTATTGATGCAGTAAAACTTGGTGTCAATATGCAGCCGTTTGATGTTGTTTACTATCCTCGGGTTGGTACTCCCGAGTTTTTTGTGAAAACCTCTTTAATTAGAACAACACTTCAGACTAGGTGGTGTTCTGGAATGAGGTTCAAGATGGTCATTGAAACGGAAGACTCGTCAAGGATACTTTGGTTTTACGGAACAATTGCTTCTGTTCAGGCTGTTGATCCAGCATGGCCCGACTCTCTTTGGAGACTTCTGCAGGTTACATGGGATAATCCTTATGTACTCACAAATATGAAAATACTGAATCCGTGGCAAGTCAAAATACTACCAGACATGCCAACTTTCCCTATTGACGGCCAATTATCAATGCCAACTTTTCCAAACATTCAGACTCCAAATGTTCCAATTATGTATTTACCAGAAACTAGTCCTGCAGGCATGCAGGGAGCTAGGCATGATCATTTTAGTCACTCCAAATCAGTTCCATTTAATCGCGATGCTACAACATCGACGACTGTCTCTAATAATCTGACACTGCAAAAGGAGAGTGCCAGTGAGAATGCTTCGTGCTTGATATCAATGTCTACACAACCGTCAGAAAAACAGGATCATACGAAGCCGAAACAGATTGTGCTTTTTGGAAAAACAATACAAATTGACACGGGAAATGGAAATGCTGAGAAGAAAATCACTAGTTCTTCTTCTGATCCTCTACAAGACCTGCCGAAACGTTGCTCTGGCGAGAGGCTGGAATGTGATCCAGAGAGCCAATGCAAAGAAGATACTTTGGCAGGAGAAACAGTGGAGATTGAAGATTCAGAATTCAATTTTAAAATGACGAGATCTAAGAAAGGTTGCAATAAAGAGTCCAAGAAGAAGAAGATAGATGGAAACACGGATGTGGATCCTCCGCTATGGCATGCTATTGCTGGAAGAATCGTGCAAATTCCCCAAGTTAACTCTAAGATCTTCTACTTCCCTCAAGGTCATGCCGAGCATGCATATCAACCTGTCAATTTTCCTGCTGACATCAAAATTCCATCCCGAATTCCATGTAGAGTTGCAGCTATCAGTTATAGGGCTGATCCTGACACAGATGAAGTGTATGCAAAACTCAAGCTTGTTCCTCTGAATAATAGCGAGGTTAGTTCTGATGATGACGCTGTTGGTGGCATTGATGATATGTCTAAAACTAAGATTAAATATAAATCTTATACAAAAACCTTGACACATTCTGATGCAACCTGTGGTTGTAGTGGTGGATTTTCCTGTCCTAGGTATTGTGCAGAAACACTTTTTCCTCCATTAGACTATTCAGGTACCCCTCCTTCTCAGAACATTTCTCCAACAGATGTTCATGGCGAAACATGGGTATTCAAACATGTTTATAGGGGCGCCCCGAAGAGGCATATATTAGTAACTGGGTGGAGAGAGTTTGTAACCGAAAAGCATCTTGTTTCGGGGGATTCACTTGTGTTTTTGAGAGCTGAAAACGGTGATCTTCATATTGGAATTCGAAGGTCTAAGAGAGGAAACGACTATGGATTTAACCCTTCATCAAAGAGCAAACCTGGTAATGAAATTGGAATTCGTCTTGTACCTTCATCCGGAGAACTTACCTCGTCTTCAGGAGAGAAAGATGATAAACTTCAAAAAAATGATAAAGGAAATGACTTGAGAATAAGTGATAAGGTGATGGGAATAGGAAAAGTGAAGGCTGAAGATGTTATTGAAGCAGTAAAACTTGGTGTCAATATGCAGCCGTTTGATGTGGTTTACTATCCTCGGGTTGGAACTCCCGAGTTTTTTGTGGAAACTTCTTTAATTAGAACAGCACTTCAGACTCAGTGGTATTGTGGAATGAGGTTCAAGATGGCCATTGAAACTGAAGAAGACTTGTCAAGGATAATTTGGTTTTACGGAACAATTACTTCTTTTATAGCTGCGGATCCAGCATGGCCTGATTCTCTTTGGAGACTTCTGCAGCCTTATTTCCAACAACCATTTAATCACGATGATGCTACAACATCGACGATAATCTCTAATAACCCCGCATTGCAAATGGCAAGCACCAGTGAGAATGTTTCATACTCTACACAACCATCAGAGACACTGGATCATGCCAAGTCGGAAGAGTTTGTGCCTTTTAGCCAAACAATACAAATTGACTCGGGAAATGAAAATGCTGAGAAGAGAGTCACCAATTATTCTTCTGATCCTCTACAAGACCTGCTGAAAGTTTCCTCTGGTGAGAAGCTGGAGTGTAATCCCGACAACCAATGCAAAAAAGATGCTTTGGCTGGAGAAACAGTGGAGATTGAAGATTCAGTGAGTTCATCAGAAGAGGAAGCGTGGCAATTGTATTTGCAGTGGAATGAAGAAGAATGA 3081 0.409 MVQIPQVNSNVFYFPQGHAEHAYQPVHFPADFKIPSKIPCRVAAIHYRADPATDEVYAKLRLVPLHISKVSIDDDDVVGNDNMSETKNKYQSHTKTLTQSDANNGGGFSCPKNCAETLFPPLDYSGQLLSQDIFLMDAHGETWRFRHVYSGMPKRHLLTTGWSDFVTDKLLVSGDSLVFVKAENSDLHIGIRRSKKRNDCRFNFPSKRKSGSETGIRLRPPSYGGKVKAEDVIDAVKLGVNMQPFDVVYYPRVGTPEFFVKTSLIRTTLQTRWCSGMRFKMVIETEDSSRILWFYGTIASVQAVDPAWPDSLWRLLQVTWDNPYVLTNMKILNPWQVKILPDMPTFPIDGQLSMPTFPNIQTPNVPIMYLPETSPAGMQGARHDHFSHSKSVPFNRDATTSTTVSNNLTLQKESASENASCLISMSTQPSEKQDHTKPKQIVLFGKTIQIDTGNGNAEKKITSSSSDPLQDLPKRCSGERLECDPESQCKEDTLAGETVEIEDSEFNFKMTRSKKGCNKESKKKKIDGNTDVDPPLWHAIAGRIVQIPQVNSKIFYFPQGHAEHAYQPVNFPADIKIPSRIPCRVAAISYRADPDTDEVYAKLKLVPLNNSEVSSDDDAVGGIDDMSKTKIKYKSYTKTLTHSDATCGCSGGFSCPRYCAETLFPPLDYSGTPPSQNISPTDVHGETWVFKHVYRGAPKRHILVTGWREFVTEKHLVSGDSLVFLRAENGDLHIGIRRSKRGNDYGFNPSSKSKPGNEIGIRLVPSSGELTSSSGEKDDKLQKNDKGNDLRISDKVMGIGKVKAEDVIEAVKLGVNMQPFDVVYYPRVGTPEFFVETSLIRTALQTQWYCGMRFKMAIETEEDLSRIIWFYGTITSFIAADPAWPDSLWRLLQPYFQQPFNHDDATTSTIISNNPALQMASTSENVSYSTQPSETLDHAKSEEFVPFSQTIQIDSGNENAEKRVTNYSSDPLQDLLKVSSGEKLECNPDNQCKKDALAGETVEIEDSVSSSEEEAWQLYLQWNEEE 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04185 1026 CDD B3_DNA 94 193 IPR003340 GO:0003677
Vivi6g04185 1026 Pfam B3 DNA binding domain 638 739 IPR003340 GO:0003677
Vivi6g04185 1026 Pfam B3 DNA binding domain 95 194 IPR003340 GO:0003677
Vivi6g04185 1026 MobiDBLite consensus disorder prediction 773 787 - -
Vivi6g04185 1026 MobiDBLite consensus disorder prediction 453 473 - -
Vivi6g04185 1026 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 466 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi6g04185 1026 Gene3D - 91 194 IPR015300 -
Vivi6g04185 1026 Gene3D - 634 739 IPR015300 -
Vivi6g04185 1026 CDD B3_DNA 634 738 IPR003340 GO:0003677
Vivi6g04185 1026 MobiDBLite consensus disorder prediction 766 787 - -
Vivi6g04185 1026 FunFam Auxin response factor 634 740 - -
Vivi6g04185 1026 Pfam Auxin response factor 240 317 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi6g04185 1026 Pfam Auxin response factor 815 893 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi6g04185 1026 ProSiteProfiles B3 DNA-binding domain profile. 93 195 IPR003340 GO:0003677
Vivi6g04185 1026 Gene3D - 847 909 - -
Vivi6g04185 1026 ProSiteProfiles B3 DNA-binding domain profile. 682 740 IPR003340 GO:0003677
Vivi6g04185 1026 SUPERFAMILY DNA-binding pseudobarrel domain 633 741 IPR015300 -
Vivi6g04185 1026 SMART B3_2 636 740 IPR003340 GO:0003677
Vivi6g04185 1026 SMART B3_2 93 195 IPR003340 GO:0003677
Vivi6g04185 1026 MobiDBLite consensus disorder prediction 453 471 - -
Vivi6g04185 1026 FunFam Auxin response factor 91 195 - -
Vivi6g04185 1026 Gene3D - 272 343 - -
Vivi6g04185 1026 SUPERFAMILY DNA-binding pseudobarrel domain 89 195 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04185 Vivi-Chr6 141254507 141260369 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04185 532 899 B3 DNA Binding Superfamily AT4G30080 49.867 3.46e-107 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi6g04185 B3 8.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04185 - - vvo:131614830 2073.51