Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04183 ATGGCAAGATCTAGGAAAGGAAAAGAAAAAGTTGCAATAGAGTCAAAGAAGAATAAGACAGATGGGAACAAGGATGTGGATCCTCAGCTATGGCATGCTCTTGCTGGAAGAATAGTGCAAATTCCACAAGTTAACTCTAACATCTTCTACTTCCCTCAAGGTCATGCCGAGCATGCATATCAACCCGTCAATTTTCCTGCTGACATCAAAATTCCATCCCAAATTCCATGTAGAGTTGCAGCTATCCATTATAGGGCTGATCCTGACACAGATGAAGTGTATGCAAAACTCAGGCTTGTTCCTCTGAATAATAGCGAGGTTAGTTTTGATGATGATGCTGTTGCTGGCATCAATGATATGTCTGTAACTAGGAATAAATATCAATCTTATACAAAAACCTTGACACAATCTGAAGTAAGCCATGCTTCTTTTGGATTATCTTGTCCTAAGAATTGTGCAGAAACAATTTTTCCTCCATTAGATTATTCAGGTAACCCTACTTCCCAGGACATTTCTCCCACGGATGTTCATGGTGAAACATGGGAATTCAAACATGTTTATAAGGATGCGCGAAAGCGGCATCTGTTAACAACTGGGTGGAGTGAGTTTGTAACCGAAAAGCTACTTGTTTCGGGGGATTCACTTGTGTTTCTGAGAGCGGAAAACGGTGATCTTCATATTGGAATTCGAAGGTCTAAAAGAGGAAACAAATTTGGATCTAACCCTTCATCAAAGAGCAAACCTGTTAATGAAATTGGAATTCATCTTGTACCATCCCACGGAGAACTTACCTCGTCTTCAAGAGAGAAAGACGATAAACCTCAAAAACATGATATAGGAAATGAATTGAGAAGTGATAAGGTGATGGGAATTGGGAAAGTGAAGGCTGAAGATGTTATTGAAGCAGTAAGACTTGGTGTCAATAAGCAACCATTTGATGTGGTTTACTATCCTTGGGTTGGTACTCCCGAGTTTTTTGTGAAAACCTCATTAATTAGAACAGCAATTCAGAATAAGTGGCGTTGTGGAATGAGGTTCATGATGGCCATTGAAACTGAAGACCCGTCAATGAAAGCGCTCTGGTAG 1086 0.4006 MARSRKGKEKVAIESKKNKTDGNKDVDPQLWHALAGRIVQIPQVNSNIFYFPQGHAEHAYQPVNFPADIKIPSQIPCRVAAIHYRADPDTDEVYAKLRLVPLNNSEVSFDDDAVAGINDMSVTRNKYQSYTKTLTQSEVSHASFGLSCPKNCAETIFPPLDYSGNPTSQDISPTDVHGETWEFKHVYKDARKRHLLTTGWSEFVTEKLLVSGDSLVFLRAENGDLHIGIRRSKRGNKFGSNPSSKSKPVNEIGIHLVPSHGELTSSSREKDDKPQKHDIGNELRSDKVMGIGKVKAEDVIEAVRLGVNKQPFDVVYYPWVGTPEFFVKTSLIRTAIQNKWRCGMRFMMAIETEDPSMKALW 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04183 361 CDD B3_DNA 129 231 IPR003340 GO:0003677
Vivi6g04183 361 MobiDBLite consensus disorder prediction 260 281 - -
Vivi6g04183 361 Pfam Auxin response factor 305 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi6g04183 361 MobiDBLite consensus disorder prediction 1 26 - -
Vivi6g04183 361 SUPERFAMILY DNA-binding pseudobarrel domain 126 234 IPR015300 -
Vivi6g04183 361 Gene3D - 128 232 IPR015300 -
Vivi6g04183 361 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Vivi6g04183 361 MobiDBLite consensus disorder prediction 232 251 - -
Vivi6g04183 361 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Vivi6g04183 361 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 356 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi6g04183 361 SMART B3_2 130 233 IPR003340 GO:0003677
Vivi6g04183 361 MobiDBLite consensus disorder prediction 264 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04183 Vivi-Chr6 141231738 141232828 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04183 24 356 B3 DNA Binding Superfamily AT4G30080 48.802 9.37e-96 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi6g04183 B3 3.8e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04183 - - vvo:131614826 741.495