LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi6g04182	ATGGCAACATCTGGGAAAGGAAAAGTAAAAGATTGCAATAGAGAGTCAAAGAAGAACGAAGAGGTGGATCCTCAGCTATGGCATGCTTTTGCTGGAGTAGTGGTTCAAATTCCACAAGTTAACTCTAACATCTTCTACTTTCCTCAAGGTCATGCCGAGCACGCATCTGAACCTGTCAATTTTCCTGCTGACATCAAAATTCCATCCAAAATTCCATGTAGAGTTGCAGCTATCAGTTATAGGGCTGATCCTGACACAGATGAGGTGTATGCAAAACTCAGGCTTGTTCCTCTTAATAGTAACGAGGTTAGTAGTGATGATGACGCTGTTGGTGGCATCGATGATATGTCTGCAACTAAGAATAAATATCAATCTTATACGAAAACTTTGACACAATCTGATGCAAATTATGGTTCTAAGGTATTTTTTTGTCCTAAGAGATGTGCAGAAACAATTTTTCCCCCATTAGACTATTCAGGTACCCCTCCTTGTCAGAACATTTGTCCCACTGATGTTCATGGCAAAACGTGGGAATTCGAACATGTTTACAAGGGCTCGCCGACGCGACATCAGTTAACAATCAAATGGAGCGATTTTGTAACCGACAAGCAACTTGTTTCGGGGGATTCACTTGTGTTTTTGAGAGCTGAAAATGGTGATCTTCATATTGGAATTCGAAGGTCTAAAATACTAAACGAAAATGAATTGAGAATACATGATAAGATTATGGGTAGGGGAAAAGTGAAGGCTGAAGATGTTCTGGAAGCAGTAAGACTTGCTGTCAACATGCAACCGTTTGATGTGGTTTACTATCCTCGGGTTGGTACTCCTGAATTTTTTGTGAAAACCTCTTCAATTAGAACAGCACTTCAGACTCAATGGTATAGTGGAATGAGGTTCCAGATGGCCAGTGAAACTGAAGACTCAACAGAGATTTATTGGCTTATGGGAACAATTACTTCTCTTCAGGCTGCTGATCCAGCATGGCCCAACTCTCTTTGGAGACTTCTGCAGGTTAAATGGGATAATCCTTTTGTACTCACAAATATTAAAATGCTGAATTCGTGGCAAGTCGAAATACTATCAGACGTGCCAACTTCGCCTATTGACGGCCAATTATCAATGCCAACTTTTCCAAACATTCAAACTCCAAATGATCCAATGATGTATTTACCAGAAACTAGTCCTGCAGGCATGCAGGCAGCCAGGCATGATCATTTTAGTCACTCCAAATCAGTTCCATTTAATCGCGATGCTACAACATCGATGACTGTCTCTAATAACCTGAGATTGCAAAAGGAGAGCGCCAGTGAGAATGCTTCGTGCTTGATATCAATGTCTACACAACCGTCAGAGAAACAGGATCATGCAAAGCCGAAACAGGTTGTGCTTTTAGGAAAAACAATACAAATTGACACAGGAAATGAAAATGCTGAGAAGAAAATCACTAGTTCTTCTTATGATCCTCTACAAGACCTGCCGAAACGTTCATCTCGCGAGAGGCTGGAATGTGATCCCCAGAGCCAATGCAAAGAAGATACTTTGGCAGGAGAAACAGTGGAGATTGAAGATTCAGGTAAGAATAAGAATTGA	1593	0.4099	MATSGKGKVKDCNRESKKNEEVDPQLWHAFAGVVVQIPQVNSNIFYFPQGHAEHASEPVNFPADIKIPSKIPCRVAAISYRADPDTDEVYAKLRLVPLNSNEVSSDDDAVGGIDDMSATKNKYQSYTKTLTQSDANYGSKVFFCPKRCAETIFPPLDYSGTPPCQNICPTDVHGKTWEFEHVYKGSPTRHQLTIKWSDFVTDKQLVSGDSLVFLRAENGDLHIGIRRSKILNENELRIHDKIMGRGKVKAEDVLEAVRLAVNMQPFDVVYYPRVGTPEFFVKTSSIRTALQTQWYSGMRFQMASETEDSTEIYWLMGTITSLQAADPAWPNSLWRLLQVKWDNPFVLTNIKMLNSWQVEILSDVPTSPIDGQLSMPTFPNIQTPNDPMMYLPETSPAGMQAARHDHFSHSKSVPFNRDATTSMTVSNNLRLQKESASENASCLISMSTQPSEKQDHAKPKQVVLLGKTIQIDTGNENAEKKITSSSYDPLQDLPKRSSRERLECDPQSQCKEDTLAGETVEIEDSGKNKN	530

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi6g04182	530	MobiDBLite	consensus disorder prediction	516	530	-	-
	Vivi6g04182	530	Pfam	Auxin response factor	256	338	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
	Vivi6g04182	530	Pfam	B3 DNA binding domain	127	228	IPR003340	GO:0003677
	Vivi6g04182	530	SMART	B3_2	126	229	IPR003340	GO:0003677
	Vivi6g04182	530	MobiDBLite	consensus disorder prediction	475	530	-	-
	Vivi6g04182	530	Gene3D	-	294	366	-	-
	Vivi6g04182	530	MobiDBLite	consensus disorder prediction	493	508	-	-
	Vivi6g04182	530	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	20	471	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Vivi6g04182	530	CDD	B3_DNA	125	227	IPR003340	GO:0003677
	Vivi6g04182	530	MobiDBLite	consensus disorder prediction	1	21	-	-
	Vivi6g04182	530	SUPERFAMILY	DNA-binding pseudobarrel domain	122	230	IPR015300	-
	Vivi6g04182	530	ProSiteProfiles	B3 DNA-binding domain profile.	171	229	IPR003340	GO:0003677
	Vivi6g04182	530	Gene3D	-	124	229	IPR015300	-
	Vivi6g04182	530	MobiDBLite	consensus disorder prediction	475	492	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi6g04182	Vivi-Chr6	141218134	141219825	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi6g04182	22	469	B3 DNA Binding Superfamily	AT4G30080	41.586	5.59e-124	376

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Vivi6g04182		B3	1.5e-13	CL0405