Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04181 ATGGTTCAAATTCCAGAACTTAACTCTAAGATATTCTACTTCCCTCAAGGTCATGCCGAGCATGCATATCAACCTGTCCATTTTGCTACTGACTTCAAAATTCCATCCAAAATTCCATGTAGAGTTGAGGCTATCCATTATAGGGCCGATCCGGCCACAGATGAAGTGTATGCAAAACTTAGGCTTGTTCCTCTGCATAGTAGCGAAGTTAGTATGGATGATGACGATGTCGCTGACATCGATACTATGTCTGAAACTAAAAATAAATATCAATCTTACACGAAAATATTGACACAGTCTGATGCAAACAATGGTGGTGGATTCTCTTGTCCTAAATATTGTGCCGAAACACTTTTTCCTCCATTAGACTATTCAGATATGCTTCCTTCTCAGGAGATTTCTCCCAAGGATGTGCATGGAGAAACATGGAGATTCAGACATGCCTACAGGGGCGCACCGAAGCGGCATCTGTTCACAACTAGGTGGAGTGATTTTGTGACCGCCAAGCTACTTGTTTTGGGGGATTCACTTGTGTTTGTGAGAGATGAATACAATGATCTTCATGTTGGAATTCGAAGGTCTAAAAAACGAAACGACAATATATTTAACTTTTCATCAAAGAGGAAACTTGATAGTGAAACTGGAATTTGTCTTGGACCATCATCTTTAGGAGAGTTGAGAATAAGTGATAAGGTGATGGGAATAGGAAAAGTGAAGGCTGAAGATGTTCTGGAAGCAGTAAGACTTGCTGTCAACATGCAACCGTTTGAAGTGGTTTACTATCCTGGGGTTGGTACTCCCGAATTTTTTGTGAAAACCTCTTTAATTAGAACAGCACTTCAGATTAGGTGGCATCGTGGAATGAGGTTTAAGATGGCCATTGAAACTGAAGACTCATCAAAGATAAATTGGTATATGGGAACAATTGCTTCTATTCAGGCTGCTGATCCAGCATGGCCCGACTCACTTTGGAGACTTCTGCAGGTTACATGGGACGAACCTGATTTAGTTACAAATACAAAAATGCTGAATCTGTGGCAAGTCGAAATAGTATCGGAAATGCCTTCTCCCCCTTTCTTGCCATCAAGTAAGAAACTGAGATTGGCTCAACACCCAACTTTCTCCATTGATGGCCAATTATCAATGCCAACTTTTCCAAATGCGGGCATGCAGGGAGCCAGGCATAATCATTTTAGTCACTCCAATTCATCCTATCGTGTCGAGAAAATTCCACTAGGTCTCTTTTGGCTTTATTTCCGACAATCCTTTGATCAAGATGCCTCAACATCGAGGACTGTCCCTAATAGCCCAACATTGCAAAAGGATAGCAGTAGTGAGAATGTTTCCGGTGAAAATGTTTCAGGCTCGATGTCAATTTCTACACAACCATTAGAGAAACTGAATCATGAGAAGCCCAAGGAGATCGTGCTTTTTGGCCAAAAAGTGTATACGAAGCCAAAACAGTTGGTGCTTTTTGGCCAAAAAATACACATTAACTCGGGATATGAAAATGGTGAGGAGAAAATCACAAAATATTCTTCTGATTCTGATCTACAAGACTCCTCTAGTGAGAGGCTGGAATATAATCTAGAGAACCAATGCAAAAACGATACATTGGAAGGAGAAACAATGGAGATTGAAGATTCAGGTAAGAATAAGTAA 1662 0.4061 MVQIPELNSKIFYFPQGHAEHAYQPVHFATDFKIPSKIPCRVEAIHYRADPATDEVYAKLRLVPLHSSEVSMDDDDVADIDTMSETKNKYQSYTKILTQSDANNGGGFSCPKYCAETLFPPLDYSDMLPSQEISPKDVHGETWRFRHAYRGAPKRHLFTTRWSDFVTAKLLVLGDSLVFVRDEYNDLHVGIRRSKKRNDNIFNFSSKRKLDSETGICLGPSSLGELRISDKVMGIGKVKAEDVLEAVRLAVNMQPFEVVYYPGVGTPEFFVKTSLIRTALQIRWHRGMRFKMAIETEDSSKINWYMGTIASIQAADPAWPDSLWRLLQVTWDEPDLVTNTKMLNLWQVEIVSEMPSPPFLPSSKKLRLAQHPTFSIDGQLSMPTFPNAGMQGARHNHFSHSNSSYRVEKIPLGLFWLYFRQSFDQDASTSRTVPNSPTLQKDSSSENVSGENVSGSMSISTQPLEKLNHEKPKEIVLFGQKVYTKPKQLVLFGQKIHINSGYENGEEKITKYSSDSDLQDSSSERLEYNLENQCKNDTLEGETMEIEDSGKNK 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04181 553 FunFam Auxin response factor 91 195 - -
Vivi6g04181 553 MobiDBLite consensus disorder prediction 538 553 - -
Vivi6g04181 553 Pfam Auxin response factor 246 328 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi6g04181 553 SUPERFAMILY DNA-binding pseudobarrel domain 89 197 IPR015300 -
Vivi6g04181 553 Gene3D - 91 194 IPR015300 -
Vivi6g04181 553 CDD B3_DNA 92 193 IPR003340 GO:0003677
Vivi6g04181 553 MobiDBLite consensus disorder prediction 530 553 - -
Vivi6g04181 553 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 524 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi6g04181 553 Pfam B3 DNA binding domain 94 194 IPR003340 GO:0003677
Vivi6g04181 553 Gene3D - 283 355 - -
Vivi6g04181 553 ProSiteProfiles B3 DNA-binding domain profile. 93 195 IPR003340 GO:0003677
Vivi6g04181 553 MobiDBLite consensus disorder prediction 428 458 - -
Vivi6g04181 553 FunFam Auxin response factor 283 355 - -
Vivi6g04181 553 SMART B3_2 93 195 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04181 Vivi-Chr6 141202109 141203870 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04181 1 396 B3 DNA Binding Superfamily AT4G30080 49.883 3.33e-130 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi6g04181 B3 1.1e-14 CL0405