Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04179 ATGGCAAGATCTAGGAAAGGAAAAGAAAAAGTTGCAATAGAGTCAAAGAAGAATAAGACAGATGGGAACAAGGATGTGGATCCTCAGCTATGGCATGCTCTTGCTGGAAGAATAGTGCAAATTCCACAAGTTAACTCTAACATCTTCTACTTCCCTCAAGGTCATACCGAGCATGCATATCAACCCGTCAATTTTCCTGCTGACATCAAAATTCCATCCCAAATTCCATGTAGAGTTGCAGCTATCCATTATAGGGCTGATCCTGACACAGATGAAGTGTATGCAAAACTCAGGCTTGTTCCTCTGAATAATAGCGAGGTTAGTTTTGATGATGATGCTGTTGCTGGCATCAATGATATGTCTGTAACTAGGAATAAATATCAATCTTATACAAAAACCTTGACACAATCTGAAGTAAGCCATGCTTCTTTTGGATTATCTTGTCCTAAGAATTGTGCAGAAACAATTTTTCCTCCATTAGATTATTCAGCTGACCCTACTTCCCAGGACATTTCTCCCACGGATGTTCATGGTGAAACATGGGAATTCAAACATGTTTATAAGGATGCGCGAAAGCGGCATCTGTTAACAACTGGGTGGAGTGAGTTTGTAACCGAAAAGCTACTTGTTTCGGGGGATTCACTTGTGTTTCTGAGAGCGGAAAACGGTGATCTTCATATTGGAATTCGAAGGTCTAAAAGAGGAAACAAATTTGGATCTAACCCTTCATCAAAGAGCAAACCTGTTAATGAAATTGGAATTCATCTTGTACCATCCCACGGAGAACTTACCTCGTCTTCAAGAGAGAAAGACGATAAACCTCAAAAACATGATATAGGAAATGAATTGAGAAGTGATAAGGTGATGGGAATTGGGAAAGTGAAGGCTGAAGATGTTATTGAAGCAGTAAGACTTGGTGTCAATAAGCAACCATTTGATGTGGTTTACTATCCTTGGGTTGGTACTCCCGAGTTTTTTGTGAAAACCTCATTAATTAGAACAGCAATTCAGAATAAGTGGCGTTGTGGAATGAGGTTCATGATGGCCATTGAAACTGAAGACCCGTCAATGATAAATTGGTTAATGGGAACAATTGCTTCTGTTCAGGCTGCTGATCCAGCATGGCCCGACTCTCTTTGGAGACGTCTGCAGGTTACGTGGGATGGTCCCGATTCAATTACAAATACAAAAAGACCGAACCCCTGGCAAGTTGTAATATTACCGGACATGTCACCTTCAATCTCTTTTTCCCCTTTATTGCCTCAACACCTAAAGTTTCCCATGGATGGCCAATTTTCAGTGCCAACTTTTCCAAACAACTTTCAAACACCAAATGTTCCTATTTTTCCTTTACCAGAAACTAGTACTGCAGGCATGCAGGGAGCCAGGCATGATCATTATAGTCACTCCAAATCAGACTTTCACCTTGAAAACACTCCATTAGATAACCCAGCATTGCAAAAGGAGAGTACCATTGAGAATACTTCGTGCTTGATATCAATGTCTACACAACCGTCAGAGAAACCGAATCATGCGAAGCCGAAACAGATTCTGCTTTTTGGACAAACAGTACAAGTTAACACAGGAAATGAAAATGCTGAGAAGAAAATCACTAGCTCTTCTTCTGATCCTGTACAAGACCTGCCAAAACGTTCCTCTGGTGAGAGGCTGGAATGTAATCCCGAGAGCCAATGCAAAAAAGATACATTGGCAGGAGAAACAGTGGACAATGAAGATTGA 1740 0.4086 MARSRKGKEKVAIESKKNKTDGNKDVDPQLWHALAGRIVQIPQVNSNIFYFPQGHTEHAYQPVNFPADIKIPSQIPCRVAAIHYRADPDTDEVYAKLRLVPLNNSEVSFDDDAVAGINDMSVTRNKYQSYTKTLTQSEVSHASFGLSCPKNCAETIFPPLDYSADPTSQDISPTDVHGETWEFKHVYKDARKRHLLTTGWSEFVTEKLLVSGDSLVFLRAENGDLHIGIRRSKRGNKFGSNPSSKSKPVNEIGIHLVPSHGELTSSSREKDDKPQKHDIGNELRSDKVMGIGKVKAEDVIEAVRLGVNKQPFDVVYYPWVGTPEFFVKTSLIRTAIQNKWRCGMRFMMAIETEDPSMINWLMGTIASVQAADPAWPDSLWRRLQVTWDGPDSITNTKRPNPWQVVILPDMSPSISFSPLLPQHLKFPMDGQFSVPTFPNNFQTPNVPIFPLPETSTAGMQGARHDHYSHSKSDFHLENTPLDNPALQKESTIENTSCLISMSTQPSEKPNHAKPKQILLFGQTVQVNTGNENAEKKITSSSSDPVQDLPKRSSGERLECNPESQCKKDTLAGETVDNED 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04179 579 Gene3D - 128 232 IPR015300 -
Vivi6g04179 579 Gene3D - 339 413 - -
Vivi6g04179 579 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 540 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi6g04179 579 MobiDBLite consensus disorder prediction 549 579 - -
Vivi6g04179 579 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Vivi6g04179 579 MobiDBLite consensus disorder prediction 264 282 - -
Vivi6g04179 579 CDD B3_DNA 129 231 IPR003340 GO:0003677
Vivi6g04179 579 MobiDBLite consensus disorder prediction 1 26 - -
Vivi6g04179 579 Pfam Auxin response factor 306 384 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi6g04179 579 MobiDBLite consensus disorder prediction 232 251 - -
Vivi6g04179 579 SMART B3_2 130 233 IPR003340 GO:0003677
Vivi6g04179 579 MobiDBLite consensus disorder prediction 529 579 - -
Vivi6g04179 579 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Vivi6g04179 579 SUPERFAMILY DNA-binding pseudobarrel domain 126 234 IPR015300 -
Vivi6g04179 579 MobiDBLite consensus disorder prediction 529 548 - -
Vivi6g04179 579 MobiDBLite consensus disorder prediction 455 477 - -
Vivi6g04179 579 MobiDBLite consensus disorder prediction 260 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04179 Vivi-Chr6 141190614 141192469 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04179 24 574 B3 DNA Binding Superfamily AT4G30080 40.785 4.11e-129 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi6g04179 B3 1.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04179 - - vvo:131614819 749.199