Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04177 ATGGCAACATCTGGGAAAGGAAAAGAAAAAGATTGCAATAGAGAGTCAAAGAAGAACAAAGAGGTGGATCCTCAGCTATGGCATGCTTTTGCTGGAGTAGTGGTTCAAATTCCACAAGTTAACTCTAACATCTTCTACTTCCCTCAAGGTCATGCCGAGCACGCATCTGAACCTGTCAATTTTCCTGCTGACATCAAAATTCCATCCAAAATTCCATGTAGAGTTGCAGCTATCAGTTATAGGGCTGATCCTGACACAGATGAGGTGTATGCAAAACTCAGGCTTGTTCCTCTTAATAGTAACGAGGTTAGTAGTGATGATGACGCTGTTGGTGGCATCGATGATATGTCTGCAACTAAGAATAAATATCAATCTTATACGAAAACTTTGACACAATCTGATGCAAATTATGGTTCTAAGGTATTTTTTTGTCCTAAGAGATGTGCAGAAACAATTTTTCCCCCATTAGACTATTCAGGTACCCCTCCTTGTCAGAACATTTGTCCCACTGATGTTCATGGCAAAACGTGGGAATTCAATCATGTTTACAAGGGCTCGCCGACGCGACATCAGTTAACAATCAAATGGAGCGATTTTGTAACCGACAAGCAACTTGTTTCGGGGGATTCACTTGTGTTTTTGAGAGCTGAAAATGGTGATCTTCATATTGGAATTCGAAGGTCTAAAATACTAAACGAAAATGGATTGAGAATACATGATAAGATTATGGGTAGGGGAAAAGTGAAGGCTGAAGATGTTCTGGAAGCAGTAAGACTTGCTGTCAACATGCAACCGTTTGATGTGGTTTACTATCCTAGGGTTGGTACTCCCGAATTTTTTGTGAGAACCTCTTTAATTAGAACAACACTTCAGACTCAGTGGTATAGTGGAATGAGGTTCCAGATGGCCAGTGAAACTGAAGACTCAACAGAGATTTATTGGCTTATGGGAACAATTACTTCTCTTCAGGCTGCTGATCCAGCATGGCCCGACTCTCTTTGGAGACTTCTGCAGGTTACATGGGATAATCCTTTTGTACTCACAAATATTAAAATGCTGAATCCGTGGCAAGTCGAAATACTACCAGACGTGCCAACTTTGCCTATTGACGGCCAATTATCAATGCCAACTTTTCCAAACATTCAAACTCCAAATGATTCAATGATGTATTTACCAGAAACTAGTCCTGCAGGCATGCAGGCAGCCAGGCATGATCATTTTAGTCACTCCAAATCAGTTCCATTTAATCGCGATGCTACAACATCGATGACTGTCTCTAATAACCTGAGATTGCAAAAGGAGAGCGCCAGTGAGAATGCTTCGTGCTTGATATCAATGTCTACACAACCGTCAGAGAAACAGGATCATGCAAAGCCGAAACAGATTGTGCTTTTAGGAAAAACAATACAAATTGACACAGGAAATGAAAATGCTGAGAAGAAAATCACTAGTTCTTCTTATGATCCTCTACAAGACCTGCCGAAACGTTCCTCTGGCGAGAGGCTGGAATGTGATCCCGAGAGCCAATGCAAAGAAGATACTTTGGCAGGAGAAACAGTGGAGATTGAAGATTCAGGTAAGAATAAGAAATGA 1593 0.4112 MATSGKGKEKDCNRESKKNKEVDPQLWHAFAGVVVQIPQVNSNIFYFPQGHAEHASEPVNFPADIKIPSKIPCRVAAISYRADPDTDEVYAKLRLVPLNSNEVSSDDDAVGGIDDMSATKNKYQSYTKTLTQSDANYGSKVFFCPKRCAETIFPPLDYSGTPPCQNICPTDVHGKTWEFNHVYKGSPTRHQLTIKWSDFVTDKQLVSGDSLVFLRAENGDLHIGIRRSKILNENGLRIHDKIMGRGKVKAEDVLEAVRLAVNMQPFDVVYYPRVGTPEFFVRTSLIRTTLQTQWYSGMRFQMASETEDSTEIYWLMGTITSLQAADPAWPDSLWRLLQVTWDNPFVLTNIKMLNPWQVEILPDVPTLPIDGQLSMPTFPNIQTPNDSMMYLPETSPAGMQAARHDHFSHSKSVPFNRDATTSMTVSNNLRLQKESASENASCLISMSTQPSEKQDHAKPKQIVLLGKTIQIDTGNENAEKKITSSSYDPLQDLPKRSSGERLECDPESQCKEDTLAGETVEIEDSGKNKK 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04177 530 MobiDBLite consensus disorder prediction 1 20 - -
Vivi6g04177 530 MobiDBLite consensus disorder prediction 475 530 - -
Vivi6g04177 530 SMART B3_2 126 229 IPR003340 GO:0003677
Vivi6g04177 530 Pfam Auxin response factor 256 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi6g04177 530 CDD B3_DNA 125 227 IPR003340 GO:0003677
Vivi6g04177 530 ProSiteProfiles B3 DNA-binding domain profile. 171 229 IPR003340 GO:0003677
Vivi6g04177 530 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Vivi6g04177 530 MobiDBLite consensus disorder prediction 494 530 - -
Vivi6g04177 530 Gene3D - 294 364 - -
Vivi6g04177 530 Gene3D - 124 229 IPR015300 -
Vivi6g04177 530 MobiDBLite consensus disorder prediction 475 492 - -
Vivi6g04177 530 SUPERFAMILY DNA-binding pseudobarrel domain 122 230 IPR015300 -
Vivi6g04177 530 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 471 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04177 Vivi-Chr6 141154511 141156355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04177 20 469 B3 DNA Binding Superfamily AT4G30080 40.812 2.66e-122 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi6g04177 B3 1.9e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04177 - - vvo:131614820 1087.4