Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04176 ATGGTGAGAACTAGCAAAGCAAAAAGAAAAGGTTGTAATAGTGCTCCTGCTAATATGAATATGGAGTCGGAGAAGTTGATTGATGGGAACAAAGATGTGGATCCTCAGTTATGGCATGCTGTTGCTGGAGGATTGGTGCAAATTCCAGAAGTTAACTCTAAGATCTTCTACTTCCCTCAAGGTCATGCCGAGCATGCATATCAACCTGTCAATTTTCCTGCTGATTTCAAACTTCCATCTTTCATTCCGTGTCGAGTTGCAGCTATTGATTATAGGGCTGATCTTGAGACGGATGAGGTGTACGCAAAACTCCGGTTTGTTCCTTTGCATATAAGTGAGGTTAGTTTTGATGATGACGGTGTTGGTGGCGTTGATAATATGTCTGAAAATAAGAATAAATATCAATCTTATACGAAAACCTTGACACAATCTGATGCAAACAATGGTGGTGGATTTTCTTGTCCTAGGTATTGTGCAGAAACACTTTTTCCTCCCTTAGACTATTCAGGTACCCCTCCTTCTCAGTACATTTATCCCATGGATGTTCATGGGGAGACGTGGGAATTCAAACATGTTTATAGGGGCACGCCGAAGCGGCATCTGTTAACAACTAACTGGAGTGATTTTGTAACCGACAAGCTACTTGTTTCGGGGGATTCACTTGTGTTTTTGAGAGCTGAAAACGGTGATCTTCATATTGGAATTCGGAGGTCTAAAAGACGAAATGACATTGGATTTAACCTTTCATTAAAGAGGAAACCTGGGAGTGAAATTGGAATTCGTATTGGACCATCATACAGACTTCCATCATCTTCGGGGGAGAAAGATAATGAACTTCCAAAAAATGATAAAGAAAATGGATTGAGAAGTAATGATAAGATTATGGGTAAGGGAAAAGTGAAGGCTGAAGATGTTCTCGAAGCAGTAAGACTTGCTGTCAATATGCAACCGTTTGATGTTGTTTACTATCCTCGAGTTGGTACTCCCGAGTTTTTTGTGAAAACCTCTTTAATTAGAACAGCATTTCAGGTTAGGTGGTGTTGTGGAATGAGGTTCAAGATGGCCATTGAAACGGAAGACTCGTCAAGGATAAGTTGGTTTCTCGGAACAATTACTTCTGTTCAGGCGGCTGATCCAGCATGGCCCGACTCTCTTTGGAGACTTCTGCAGGTTACATGGGATGAGCCTGATTTACTTAAAAATACGAAAAGGGTGAATCCGTGGCAAGTGGAAATAGTATCTAACATGCCTTCAATCCCTTTTTCCTCTTTCTTGCCAACATCGCGGAAGAAACTGAGATTGGCTCAATGCCCAGATTTCCCCGTTGATGGCCAATTTTCAATGCCAACTTTTCCAAACTACTTTCAAACTCCAAATGTTCCAATTTTTCATTTACCAGAAACTAGGCCTGCTGGTATGCAGGGAGCCAGGCATGATCCTTTTGGTCTCTCTTTACCGGACCTTCACATTAATAAGTCTCCATTAGGTCTCTTTAATCCTAATTTCCAACAACCACATGATCATAATGCATCAATATCGAAGACAGTCCCAAGTAATGCTGTATTGCAAAAGGCGAACAACAGTGAAAATATTGTTTCGTGCTTACCATCAGAGAAACATATTCATGCAAAGTCAGCCCAGATTGTGCTTTTTGGCAAAACCATACGGATTGACGCGGGAAAAGAAAATGCTGTGAAGAAAATCACTACTAATTTTTCTAATCTTCTGCGAGATTCGCCAAGACAATCCTCTGGTGAGAGAGTTGAATGTAATCCCAAGAACCAACGCAACAAAGATATTTTGGCAGGAGAAACAATGGAGATTGAACATTCAGAAAACAATTTTATAATGGCGAAATCCATGAAAGAAAGAACAAACGGTAGCAATCAAACTCGTCCTTCTAATAAGAAGAAGGAAAAGGAGTCAAGGAAGAAGTTGATTGATGGGAACAGAGATGTGGATCCTCACCTATGGCATGCTGTTGCTGGAGGAATGGTTCAAATTCCAGAACTTAACTCTAAGATATTCTACTTCCCTCAAGGTCATGCCGAGCATGCATATCAACCTGTCAATTTTCCTACTGACTTCAAAATTCCATCCAAAATTCCATGTAGAGTTGCGGCTATCCATTATAGGGCGGATCCTGCCACAGATGAAGTGTATGCAAAACTTAGGCTTGTTCCTCTGCATACTAGCGAAGTTAGTATGGATGATGACGATGTTGCTGACATCGATAATATGTCTGAAACCAAAAATAAATATCAATCTTACACGAAAATATTGACACAGTCTGATGCAAACAATGGTGGTGGATTCTCTTGTCCTAAATATTGTGCCGAAACACTTTTTCCTCCATTAGACTATTCAGATATGTTTCCTTCTCAGGAAATTTCTCCCAAGGATGTGCATGGAGAAACATGGACATTCAGACATGCCTACAGGGGCGCGCCAAAGCGGCATCTGTTCACAACTGGGTGGAGTGATTTTGTGACCGCCAAGCTACTTGTTTCGGGGGATTCACTTGTGTTTGTGAGAGATGAATACAATGATCTTCATGTTGGAATTCGAAGGTCTAAAAAACGAAACGACAGTATATTTAACTTTTCATCAAAGAGGAAACTTGATAGTGAAACTGGAATTTGTCTTGGACCATCATACGGTAGACTTACTTCGTCTTTAGGAGAGTTGAGAATAAGTGATAAGGTTATGGGAATAGGAAAAGTGAAGGCTGAAGATGTTCTTGAAGCAGTAAGACTTGGTGTCAATATGCAACCGTTTGATGTGGTTTACTATCCTCGGGCTGGTACACCCGAATTTTTTGTGAAAACCTCTTTAATTAGAACAGCACTTCAGATTAGGTGGCATCGTGGAACGAGGTTTAAGATGGCCATTGAAACTGAAGACTCGTCAAAGATAAATTGGTTTATGGGAACAATTGCTTCTATTCAGGCTGCTGATCCAGCGTGGCCCGACTCACTTTGGAGACTTCTGCAGGTTACATGGGACGAACCTGATTTAGTTACAAATACGAAAATGCTGAATCTGTGGCAAGTCGAAATAGTATCGGAAATGCCTTCTCCCCCTTTCTTGCCATCAAGTAAGAAACTGAGATTGGCTCAACACCCAACTTTCTCCATTGATGGCCAATTATCAATGCCAACTTTTCCAAATGCTGGCATGCAGGGAGCCAGGCATGATTATTTTAGTCACTCCAATTCATCCTATCGTGTCGAGAAAATTCCACTAGCTCTCTTTTGGCCTTATTTCCGACAATCCTTTGATCAAGATGCCTCAACATCGAGGACTGTCCCTAATAGCCCGACATTGCAAAAGGACAGCAATAGTGAGAATGTTTCCGGTGAGAATGTTTCAGGCTCGATGTCAATTTCTACACAACCATTAGAGAAACTGAATCATGAGAAGCCGAAGGAGATCGTGCTTTTTGGCCAAAAAGTGTATACGAAGCCAAAACAGTTGGTGCTTTTTGGCCAAAAAATACACATTAACTCGGGATATGAAAATGGTGAGGAGAAAATCACAAAATATTCTTCTGATTCTCCTCTACAAGACTCCTCTAGTGAGAGGCTGGAATATAATCTAGAGAACCAATGCAAAAACGATACATTGGAAGGAGAAACAGTGGAGATTGAAGATTCAGTGAGTCCATCAAATGAGGCAGCGCGACAGTTCTATTAA 3696 0.4099 MVRTSKAKRKGCNSAPANMNMESEKLIDGNKDVDPQLWHAVAGGLVQIPEVNSKIFYFPQGHAEHAYQPVNFPADFKLPSFIPCRVAAIDYRADLETDEVYAKLRFVPLHISEVSFDDDGVGGVDNMSENKNKYQSYTKTLTQSDANNGGGFSCPRYCAETLFPPLDYSGTPPSQYIYPMDVHGETWEFKHVYRGTPKRHLLTTNWSDFVTDKLLVSGDSLVFLRAENGDLHIGIRRSKRRNDIGFNLSLKRKPGSEIGIRIGPSYRLPSSSGEKDNELPKNDKENGLRSNDKIMGKGKVKAEDVLEAVRLAVNMQPFDVVYYPRVGTPEFFVKTSLIRTAFQVRWCCGMRFKMAIETEDSSRISWFLGTITSVQAADPAWPDSLWRLLQVTWDEPDLLKNTKRVNPWQVEIVSNMPSIPFSSFLPTSRKKLRLAQCPDFPVDGQFSMPTFPNYFQTPNVPIFHLPETRPAGMQGARHDPFGLSLPDLHINKSPLGLFNPNFQQPHDHNASISKTVPSNAVLQKANNSENIVSCLPSEKHIHAKSAQIVLFGKTIRIDAGKENAVKKITTNFSNLLRDSPRQSSGERVECNPKNQRNKDILAGETMEIEHSENNFIMAKSMKERTNGSNQTRPSNKKKEKESRKKLIDGNRDVDPHLWHAVAGGMVQIPELNSKIFYFPQGHAEHAYQPVNFPTDFKIPSKIPCRVAAIHYRADPATDEVYAKLRLVPLHTSEVSMDDDDVADIDNMSETKNKYQSYTKILTQSDANNGGGFSCPKYCAETLFPPLDYSDMFPSQEISPKDVHGETWTFRHAYRGAPKRHLFTTGWSDFVTAKLLVSGDSLVFVRDEYNDLHVGIRRSKKRNDSIFNFSSKRKLDSETGICLGPSYGRLTSSLGELRISDKVMGIGKVKAEDVLEAVRLGVNMQPFDVVYYPRAGTPEFFVKTSLIRTALQIRWHRGTRFKMAIETEDSSKINWFMGTIASIQAADPAWPDSLWRLLQVTWDEPDLVTNTKMLNLWQVEIVSEMPSPPFLPSSKKLRLAQHPTFSIDGQLSMPTFPNAGMQGARHDYFSHSNSSYRVEKIPLALFWPYFRQSFDQDASTSRTVPNSPTLQKDSNSENVSGENVSGSMSISTQPLEKLNHEKPKEIVLFGQKVYTKPKQLVLFGQKIHINSGYENGEEKITKYSSDSPLQDSSSERLEYNLENQCKNDTLEGETVEIEDSVSPSNEAARQFY 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04176 1231 SMART B3_2 137 239 IPR003340 GO:0003677
Vivi6g04176 1231 SMART B3_2 757 859 IPR003340 GO:0003677
Vivi6g04176 1231 Pfam Auxin response factor 922 998 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi6g04176 1231 Pfam Auxin response factor 308 390 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi6g04176 1231 MobiDBLite consensus disorder prediction 620 646 - -
Vivi6g04176 1231 FunFam Auxin response factor 135 239 - -
Vivi6g04176 1231 CDD B3_DNA 756 857 IPR003340 GO:0003677
Vivi6g04176 1231 SUPERFAMILY DNA-binding pseudobarrel domain 130 242 IPR015300 -
Vivi6g04176 1231 MobiDBLite consensus disorder prediction 261 292 - -
Vivi6g04176 1231 FunFam Auxin response factor 755 859 - -
Vivi6g04176 1231 SUPERFAMILY DNA-binding pseudobarrel domain 753 860 IPR015300 -
Vivi6g04176 1231 CDD B3_DNA 136 237 IPR003340 GO:0003677
Vivi6g04176 1231 MobiDBLite consensus disorder prediction 1209 1231 - -
Vivi6g04176 1231 FunFam Auxin response factor 346 418 - -
Vivi6g04176 1231 ProSiteProfiles B3 DNA-binding domain profile. 137 239 IPR003340 GO:0003677
Vivi6g04176 1231 MobiDBLite consensus disorder prediction 1097 1128 - -
Vivi6g04176 1231 Pfam B3 DNA binding domain 758 858 IPR003340 GO:0003677
Vivi6g04176 1231 Pfam B3 DNA binding domain 138 238 IPR003340 GO:0003677
Vivi6g04176 1231 MobiDBLite consensus disorder prediction 1217 1231 - -
Vivi6g04176 1231 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 31 623 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi6g04176 1231 MobiDBLite consensus disorder prediction 274 292 - -
Vivi6g04176 1231 Gene3D - 954 1025 - -
Vivi6g04176 1231 Gene3D - 345 418 - -
Vivi6g04176 1231 ProSiteProfiles B3 DNA-binding domain profile. 757 859 IPR003340 GO:0003677
Vivi6g04176 1231 Gene3D - 755 858 IPR015300 -
Vivi6g04176 1231 Gene3D - 135 238 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04176 Vivi-Chr6 141142729 141152096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04176 31 489 B3 DNA Binding Superfamily AT4G30080 53.191 1.76e-156 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi6g04176 B3 6.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04176 - - vvo:131614819 2480.67