Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04168 ATGGAAGCAATAGGTGCAGCCATTACAAAAAACAACAACGGTTACGATTCATTTTGTTTGACCAATGCTAAAAATAATAACATCAAAGTGAACGGCTCTGATCCTTTGAATTGGGGTGTTGCCGCCGAGGCAATGAAAGGAAGTCACTTGGATGAGGTGAAGCGTATGGTGGAGGAGTACCGGAAGCCAGTGGTTCATCTTGGTGGTGAGACGCTGACGATTTCTCAGGTGGCTGCCATCGCTGCACATGATCATGGTGTGAAGGTGGAGCTGTCAGAATCTGCTAGGGCTGGCGTTAAGGCGAGCAGTGACTGGGTGATGGAGAGTATGAATAAAGGCACAGACAGTTACGGTGTCACCACCGGTTTCGGCGCCACATCTCACCGTCGAACCAAGCAAGGTGGTGCTTTGCAGAAAGAACTCATCAGGTTTTTAAATGCTGGAATATTTGGAAAAGGAACTGAGTCAAGCCATACACTACCACATACAGCAACAAGAGCTGCTATGCTTGTGAGAATCAACACACTTCTCCAAGGCTATTCTGGAATTAGATTTGAAATCTTGGAAGCCATAACCAAACTCCTTAACAACAACGTCACCCCATGTTTACCACTCCGTGGTACAATCACAGCTTCTGGTGATTTAGTCCCTCTTTCTTACATTGCTGGTTTATTAACTGGAAGACCAAATTCCAAAGCTCATGGACCATCCGGAGAAATACTTAATGCAAAAGAAGCTTTTCAATCAGCTGAAATCAATGCTGATTTCTTTGAATTACAACCAAAAGAAGGACTTGCACTAGTTAATGGAACTGCTGTTGGTTCTGGTTTAGCTTCTATTGTTCTCTTTGAAGCTAACATCCTAGCTGTGTTGTCAGAAGTCCTATCAGCTATTTTTGCGGAAGTTATGCAAGGAAAGCCTGAATTTACCGATCATTTGACACATAAGTTGAAGCATCATCCTGGTCAAATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGTGCTTATGTCAAAGCTGCTAAGAAGTTGCATGAGATGGACCCTTTACAAAAGCCAAAACAAGATAGATATGCACTTAGAACTTCACCACAATGGCTCGGTCCTCTGATTGAAGTCATCAGATTCTCTACAAAGTCGATTGAGCGGGAGATTAACTCTGTCAATGATAACCCGTTGATTGATGTTTCAAGAAACAAGGCTTTGCATGGTGGAAATTTTCAAGGAACACCTATTGGAGTATCCATGGATAATACACGTTTGGCTCTTGCATCAATTGCTAGTAGAAATCCCAGCTTGGATTATGGTTTTAAAGGATCCGAAATTGCCATGGCTTCTTATTGTTCTGAGTTACAGTATCTTGCAAACCCAGTTACAACTCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCTAGGAAAACTTATGAAGCTATTGAGATCCTTCAACTCATGTCTTCCACATTCTTGATTGCACTTTGTCAAGCAGTTGATTTAAGACATTTGGAAGAGAACTTGAAAAACTCAGTCAAGAATATAGTGAGCCAAGTTGCCAAAAGGACTCTTACCACAGGTATCAATGGAGAACTTCACCCTTCAAGATTTTGTGAAAAGGACTTGTTGAGAGTGGTTGATAGGGAACACATTTTTTCCTATATTGATGACCCTTGTAGTGCTACATATCCATTGATGCAAAAACTAAGGCAAGTGTTAGTGGATCATGCACTAGTAAATGGTGAATATGAGAAGAATTTGAACACATCAATCTTCCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGACCCTTCTTCCAAAAGAGGTCGAAAGTACTAGAGCTGCATATGAGAGTGGAAATTCAACAGTTCCAAACAAGATCAATGGATGCAGGTCATATCCACTTTATAGGTTTGTGAGACAAGAGTTGGGGACTGGTTTGCTAACAGGAGAAAATGTCATTTCACCAGGTGAAGAGTGTGATAAATTATTCACAGCTATGTGTCAGGGAAAAATCATTGATCCTCTTCTTGAATGCTTGGGAGAGTGGAACGGTGCTCCTCTTCCAATTTGTTAA 2103 0.4137 MEAIGAAITKNNNGYDSFCLTNAKNNNIKVNGSDPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVHLGGETLTISQVAAIAAHDHGVKVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGKGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAHGPSGEILNAKEAFQSAEINADFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILQLMSSTFLIALCQAVDLRHLEENLKNSVKNIVSQVAKRTLTTGINGELHPSRFCEKDLLRVVDREHIFSYIDDPCSATYPLMQKLRQVLVDHALVNGEYEKNLNTSIFQKIATFEDELKTLLPKEVESTRAAYESGNSTVPNKINGCRSYPLYRFVRQELGTGLLTGENVISPGEECDKLFTAMCQGKIIDPLLECLGEWNGAPLPIC 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04168 700 Gene3D Fumarase/aspartase (Central domain) 632 700 - -
Vivi6g04168 700 Gene3D Fumarase/aspartase (Central domain) 272 431 - -
Vivi6g04168 700 PANTHER HISTIDINE AMMONIA-LYASE 30 429 IPR001106 -
Vivi6g04168 700 CDD PAL-HAL 70 510 IPR001106 -
Vivi6g04168 700 NCBIfam phenylalanine ammonia-lyase 34 428 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vivi6g04168 700 Gene3D - 513 631 IPR023144 -
Vivi6g04168 700 Gene3D - 25 271 IPR024083 -
Vivi6g04168 700 SUPERFAMILY L-aspartase-like 34 700 IPR008948 GO:0003824
Vivi6g04168 700 FunFam Phenylalanine ammonia-lyase 25 271 - -
Vivi6g04168 700 Pfam Aromatic amino acid lyase 72 430 IPR001106 -
Vivi6g04168 700 Pfam Aromatic amino acid lyase 428 525 IPR001106 -
Vivi6g04168 700 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 207 223 IPR022313 GO:0016841
Vivi6g04168 700 FunFam Phenylalanine ammonia-lyase 513 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04168 Vivi-Chr6 140912733 140916043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04168 4 700 Monolignol Biosynthesis Gene Families AT2G37040 77.732 0.0 1181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04168 K10775 - gmx:100803857 1219.14