Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04166 ATGGAAGCAATAGGTGCAGCCATTACAAAAAACAACAACGGTTACGATTCATTTTGTTTGACCAATGCTAAAAATAATAACATCAAAGTGAACGGCTCTGATCCTTTGAATTGGGGTGTTGCCGCCGAGGCAATGAAAGGAAGTCACTTGGATGAGGTGAAGCGTATGGTGGAGGAGTACCGGAAGCCAGTGGTTCATCTTGGTGGTGAGACGCTGACGATTTCTCAGGTGGCTGCCATCGCTGCACATGATCATGGTGTGAAGGTGGAGCTGTCAGAATCTGCTAGGGCTGGCGTTAAGGCTAGCAGTGACTGGGTGATGGAGAGTATGAATAAAGGAACTGACAGTTACGGTGTCACCACCGGTTTCGGCGCCACGTCTCACCGTCGAACCAAGCAAGGTGGTGCTTTGCAGAAAGAACTCATCAGGTTTTTAAATGCTGGAATATTTGGAAAAGGAACTGAGTCAAGCCATACACTTCCACATACAGCAACAAGAGCTGCTATGCTTGTGAGAATCAACACACTTCTCCAAGGCTATTCTGGAATTAGATTTGAAATCTTGGAAGCCATAACCAAACTCATTAACAACAACGTCACCCCATGTTTACCACTCCGTGGTACAATCACAGCTTCTGGTGATTTAGTCCCTCTTTCTTACATTGCTGGTTTATTAACTGGAAGACCAAATTCCAAAGCTCATGGGCCATCCGGAGAAATACTTAATGCAAAAGAAGCTTTTCAATCAGCTGAAATCAATGCTGATTTCTTTGAATTACAACCAAAAGAAGGGCTTGCACTAGTTAATGGAACTGCTGTTGGTTCTGGTTTAGCTTCTATTGTTCTCTTTGAAGCTAACATCCTAGCTGTGTTGTCTGAAGTCCTATCAGCTATATTTGCTGAAGTTATGCAAGGGAAGCCTGAATTTACAGATCATTTGACACATAAGTTGAAGCACCATCCTGGTCAAATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGTGCTTATGTCAAAGCTGCTAAGAAGACGTTGCATGAGATGGATCCTTTGCAGAAGCCAAAACAAGATAGATATGCCCTTAGAACTTCACCACAATGGCTCGGTCCTCTGATTGAAGTCATCAGATTCTCTACAAAGTCGATTGAGCGGGAGATTAACTCTGTCAATGATAACCCGTTGATTGATGTTTCAAGAAACAAGGCTTTGCATGGTGGAAATTTTCAAGGAACACCTATTGGTGTATCAATGGATAATACACGTCTAGCTCTTGCATCTATTGGTAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAACGGGTTGCCTTCAAATCTCTCAGCTAGTAGAAATCCCAGCTTGGATTATGGTTTCAAAGGATCCGAAATTGCCATGGCTTCTTATTGTTCTGAGTTACAATATCTTGCAAATCCAGTCACAACTCATGTCCAAAGTGCTGAGCAACACAATCAAGATGTGAACTCTTTGGGTTTGATTTCTTCAAGGAAAACATATGAAGCCATTGAGATCCTACAACTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTAAGACATTTGGAGGAGAACTTGAAAAATTCGGTTAAGAACATTGTAAGCCAAGTTGCTAAAAGGACACTTACAACTGGTGTCAATGGAGAACTCCATCCTTCAAGGTTTTGTGAAAAGGACTTGTTGAGAGTGGTGGATAGGGAGCATGTGTTTGCCTATATTGATGATCCTTGCAGTGCTACATATCCATTGATGCAAAAATTGAGGCAGGTGTTAGTGGATCATGCATTAGTAAATGGTGAATTTGAGAAGAATTTGAACACATCAATCTTCCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGACCCTTTTGCCAAAAGAGGTCGAAAGTACTAGGGCTTCATATGAGAGTGGAAATCCAACAGTTCCAAACAAGATCAATGGATGCAGATCTTATCCACTCTATAGGTTTGTGAGAGAAGAGTTGGGAACTGGTTTGCTAACAGGAGAAAATGTCATTTCACCAGGTGAAGAGTGTGATAAATTGTTTACAGCCATGTGTGCAGGAAAAATCATTGATCCTCTTCTTGAATGTTTGGGAGAGTGGAACGGTGCTCCTCTTCCGATTTGTTAA 2181 0.4163 MEAIGAAITKNNNGYDSFCLTNAKNNNIKVNGSDPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVHLGGETLTISQVAAIAAHDHGVKVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGKGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAHGPSGEILNAKEAFQSAEINADFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKTLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILQLMSSTFLIALCQAIDLRHLEENLKNSVKNIVSQVAKRTLTTGVNGELHPSRFCEKDLLRVVDREHVFAYIDDPCSATYPLMQKLRQVLVDHALVNGEFEKNLNTSIFQKIATFEDELKTLLPKEVESTRASYESGNPTVPNKINGCRSYPLYRFVREELGTGLLTGENVISPGEECDKLFTAMCAGKIIDPLLECLGEWNGAPLPIC 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04166 726 PANTHER HISTIDINE AMMONIA-LYASE 30 726 IPR001106 -
Vivi6g04166 726 Gene3D - 539 660 IPR023144 -
Vivi6g04166 726 Gene3D - 25 271 IPR024083 -
Vivi6g04166 726 FunFam Phenylalanine ammonia-lyase 539 660 - -
Vivi6g04166 726 CDD PAL-HAL 70 536 IPR001106 -
Vivi6g04166 726 SUPERFAMILY L-aspartase-like 34 726 IPR008948 GO:0003824
Vivi6g04166 726 Pfam Aromatic amino acid lyase 72 551 IPR001106 -
Vivi6g04166 726 FunFam Phenylalanine ammonia-lyase 25 271 - -
Vivi6g04166 726 NCBIfam phenylalanine ammonia-lyase 34 715 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vivi6g04166 726 Gene3D Fumarase/aspartase (Central domain) 272 721 - -
Vivi6g04166 726 FunFam Phenylalanine ammonia-lyase 272 582 - -
Vivi6g04166 726 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 207 223 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04166 Vivi-Chr6 140872634 140875729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04166 4 726 Monolignol Biosynthesis Gene Families AT2G37040 80.801 0.0 1238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04166 K10775 - gmx:100803857 1274.23